Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04531 ATGGCTTTAGAGTTACAAGCTTTGAATTCTTCTCCCACTGGAGGAGCTACTATTCCATTCCCACACTTCAAACAGCAACAACAAGATAATCAACAGATTCAAGAACATCGTGAGTCTATGGTTAAAAAGAAACGATCAAAACGACCGCGTATTGGTAACCCACCAACTGAAGAAGAATATCTTGCTCTCTGTCTCATCATGCTCTCTCAAAGCAACATCTCTGAATCATCATCTTCACAACAACAACAACAACCGGTGAAGCTGAACCACAAGTGCAGTGTTTGCAACAAAGCTTTTCCATCTTATCAAGCACTTGGTGGTCACAAAGCCAGCCACCGCAAATCTTCATCAGAAAACCAATCCACCGCCGTCAACGAGACCGTCTCTGTTTCCGTCTCAACTGTCACCGGCAAGATGCATGAGTGTTCCATTTGTCACAAGAGCTTTCCAACTGGTCAAGCTCTTGGTGGACACAAACGATGCCACTATGAAGGAGTCATCAACAACAACCATAATCATAACGTCAGTAACAGCAACGTCAATAACAGCAGTGGAATCACAGTCTCCGACGGCGGCGCCGCGTCTTCTTCCATCAGCCACCGTGGATTTGACCTCAATTTACCAGCGCCTCTCACTGAATTCTGGTCTCCGGTTGGATTCGGTGGTGGAGATTCCAAGAAAACCAAGGTTAATGTTAATCTCGCTGGTATCAATGAACAAGAGGTAGAAAGTCCGTTGCCGGTAACCGCTAAAAGACCGCGTTTGTTTTCTGGTGAAGACAATGATGAAACGGCGTAG 798 0.4561 MALELQALNSSPTGGATIPFPHFKQQQQDNQQIQEHRESMVKKKRSKRPRIGNPPTEEEYLALCLIMLSQSNISESSSSQQQQQPVKLNHKCSVCNKAFPSYQALGGHKASHRKSSSENQSTAVNETVSVSVSTVTGKMHECSICHKSFPTGQALGGHKRCHYEGVINNNHNHNVSNSNVNNSSGITVSDGGAASSSISHRGFDLNLPAPLTEFWSPVGFGGGDSKKTKVNVNLAGINEQEVESPLPVTAKRPRLFSGEDNDETA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04531 265 Gene3D Classic Zinc Finger 88 162 - -
Mepo4g04531 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 162 IPR013087 -
Mepo4g04531 265 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 209 IPR044653 GO:0003700
Mepo4g04531 265 SMART c2h2final6 90 112 IPR013087 -
Mepo4g04531 265 SMART c2h2final6 140 162 IPR013087 -
Mepo4g04531 265 SUPERFAMILY beta-beta-alpha zinc fingers 90 162 IPR036236 -
Mepo4g04531 265 MobiDBLite consensus disorder prediction 1 34 - -
Mepo4g04531 265 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Mepo4g04531 265 MobiDBLite consensus disorder prediction 106 125 - -
Mepo4g04531 265 Pfam C2H2-type zinc finger 90 114 - -
Mepo4g04531 265 Pfam C2H2-type zinc finger 140 163 - -
Mepo4g04531 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Mepo4g04531 265 MobiDBLite consensus disorder prediction 239 265 - -
Mepo4g04531 265 MobiDBLite consensus disorder prediction 1 55 - -
Mepo4g04531 265 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04531 Mepo-Chr4 55034635 55035871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04531 3 255 C2H2 Transcription Factor Family AT1G27730 43.182 2.05e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g04531 zf-C2H2_6 2.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04531 - - psat:127091014 365.155