Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04494 ATGGCAATAGCATATCTGAAAGCAGTAAGAGTCGAGTTTCAAGATGAGATGGAAAAGTATGATGAATTTTTAAGTGTTATGAAAGAATTCAAGGCTAGGAGAATTGATACAAGTGGTCTCGTAGAAAGAGTGAAGGAGCTGCTTAAAGGGCATACAAATTTAATCTTGGGATTCAACACCTTCCTGCCAAAAGGATATGAAATCAGTACAAACGATGATGATGTTGAAAGGGAAAATTATGATGAATTTTTGAAAGTTATGAGGGATTTCAAGGCTCTCGGGATTGACAATGAAATGGAGCAGATTGTTCAACTTTTGTCACGTCTATGA 330 0.3636 MAIAYLKAVRVEFQDEMEKYDEFLSVMKEFKARRIDTSGLVERVKELLKGHTNLILGFNTFLPKGYEISTNDDDVERENYDEFLKVMRDFKALGIDNEMEQIVQLLSRL 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04494 109 Gene3D Paired amphipathic helix 2 63 IPR036600 GO:0006355
Mepo4g04494 109 ProSiteProfiles PAH domain profile. 1 65 IPR003822 GO:0006355
Mepo4g04494 109 SUPERFAMILY PAH2 domain 2 66 IPR036600 GO:0006355
Mepo4g04494 109 FunFam Paired amphipathic helix protein Sin3 1 63 - -
Mepo4g04494 109 PANTHER SIN3B-RELATED 2 74 IPR039774 GO:0003714
Mepo4g04494 109 Pfam Paired amphipathic helix repeat 18 62 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04494 Mepo-Chr4 54699520 54699849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04494 2 74 WRKY Transcription Factor Family AT4G12020 50.685 3.00e-19 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo4g04494 PAH 9.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04494 K11644 - ncol:116250578 113.235