Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04493 ATGTCCAGCGATAACATGTCTTACGGAGAAGTTCCCACGATGGAAGAAGCAATAGCATATGTCGAGGCTGTAAAAGACGAGTTTCAAGATGAGATACAAAAGTATGATGAATTTTTAAATGTTATGATGGATTTCAAGGCTTTGAGAATTGATACAAGTGGTGTCATAGCAAGATTGAAGGATTTGTTTAAAGGGCATAGAAATTTAATTTTAGGATTCAACATCTTCGTGCCAAAAGGGAGTGAGTTGGATTATGGCATAGATCCATTTGGAGTGCTGGAAGAAGCAAAAGCATATGTCAATGCAGTAAAAGTTGAGTTTGAATATGAGAGGGAAAAGTATGATGAATTTGTGAAAGTAATTAAGGATTGCAAGGCTGAGAGAATTGACACAAAAGGTCTCGCAACAAGAGTGAAGGACCTATTTAAAGGGCATACAAATTTAATGTTGGGATTTAACACCTTTCTGCTAAAGAAATATCAAATCAGTACTGATGATGATGAGACTGATGTAGAAGCAGAAGACATGGAAGTGGATCAGAACGGACTAGGAAGTACTGGACAATGA 567 0.3704 MSSDNMSYGEVPTMEEAIAYVEAVKDEFQDEIQKYDEFLNVMMDFKALRIDTSGVIARLKDLFKGHRNLILGFNIFVPKGSELDYGIDPFGVLEEAKAYVNAVKVEFEYEREKYDEFVKVIKDCKAERIDTKGLATRVKDLFKGHTNLMLGFNTFLLKKYQISTDDDETDVEAEDMEVDQNGLGSTGQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04493 188 Gene3D Paired amphipathic helix 16 78 IPR036600 GO:0006355
Mepo4g04493 188 Gene3D Paired amphipathic helix 95 156 IPR036600 GO:0006355
Mepo4g04493 188 MobiDBLite consensus disorder prediction 168 188 - -
Mepo4g04493 188 SUPERFAMILY PAH2 domain 8 79 IPR036600 GO:0006355
Mepo4g04493 188 PANTHER SIN3B-RELATED 94 174 IPR039774 GO:0003714
Mepo4g04493 188 FunFam Paired amphipathic helix protein Sin3 95 156 - -
Mepo4g04493 188 ProSiteProfiles PAH domain profile. 88 159 IPR003822 GO:0006355
Mepo4g04493 188 Pfam Paired amphipathic helix repeat 112 156 IPR003822 GO:0006355
Mepo4g04493 188 Pfam Paired amphipathic helix repeat 33 76 IPR003822 GO:0006355
Mepo4g04493 188 SUPERFAMILY PAH2 domain 93 156 IPR036600 GO:0006355
Mepo4g04493 188 ProSiteProfiles PAH domain profile. 11 80 IPR003822 GO:0006355
Mepo4g04493 188 FunFam Paired amphipathic helix protein Sin3 16 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04493 Mepo-Chr4 54697326 54697998 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04493 13 88 WRKY Transcription Factor Family AT4G12020 51.220 1.53e-18 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo4g04493 PAH 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04493 K11644 - cam:101488742 159.458