Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04487 ATGAATATGGATAACCAAAGAAAGAAAACCACAGGGCGCAAGAAGATTGAGATCAAAAAGCTTGACAAAGAATCCAACAAACAAGTCACTTTCTCAAAGAGAAGACAAGGTTTGTTCAAAAAAGCAAGTGAACTTTGTGTCTTATGTGATGTTCAAGTAGCTATGATTGTGTTCTCTCCTGCTGACAAACTATTCTGCTTTGGTCAACCCAACACCGACACAATCCTCAATAGCTATATCAAAGGAACCACCGAGTTTGAGGATTCAAAATCAACAGAAAATTCTTCAACCTACGAAAAGTACAATAGACAATATGAGGAGGCATTAAAGATGTTAGAGTTGGAGAAGAAGAAACTAGCTGATGTTGAAATTTTGGCCAAGTTTTTGAAGAAAGGTGATTGGTGGAATGATTCAATTGATGATATGAGTAGTGAAGAGCTTGAACAATTTATGGTGTCCATTTTTGAGTTAAAGAGCAAGCTTCTTAAAAGGGCTGATGAACTTATGATGCCTGTCATATAG 522 0.3659 MNMDNQRKKTTGRKKIEIKKLDKESNKQVTFSKRRQGLFKKASELCVLCDVQVAMIVFSPADKLFCFGQPNTDTILNSYIKGTTEFEDSKSTENSSTYEKYNRQYEEALKMLELEKKKLADVEILAKFLKKGDWWNDSIDDMSSEELEQFMVSIFELKSKLLKRADELMMPVI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04487 173 PANTHER MADS BOX PROTEIN 13 161 - -
Mepo4g04487 173 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Mepo4g04487 173 Gene3D - 23 106 IPR036879 GO:0003677|GO:0046983
Mepo4g04487 173 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Mepo4g04487 173 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Mepo4g04487 173 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Mepo4g04487 173 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Mepo4g04487 173 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
Mepo4g04487 173 Coils Coil 98 122 - -
Mepo4g04487 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Mepo4g04487 173 SUPERFAMILY SRF-like 12 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04487 Mepo-Chr4 54642158 54642902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04487 8 158 Type I MADS-box Gene Family AT5G60440 41.772 1.78e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo4g04487 SRF-TF 9.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04487 - - cam:101502875 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04487 4 54642158 54642902 Mepo4g04487 4 54642158 54642902 ECH