Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04452 ATGGAGGAAGAGCAACAGCAAGACTTTGTTCCCGATATCTCTGATGATGACGATGACGACGACGACCTCGACGAATATGCTGAAGCTTTACAGGTCGAACAAACCCTTGCGGATTCACTTATCACTTCCAATTCCCATTCCCAAATTGCCTCCTCCAACTCATCACCGTCACCTTCATTACTCTGCGAAGCATCTTCATCAAAAACTGTTGATGTTGCCATTGTTCTCAACACAGAGCAAATAAAACTCGTGACCAAACAAGAGTCAAATGAATCTTCACCGTCTTCTTCAATCATCATTTGCGAGATTTGCACGGAAACAAAAAGAACTGAAGAGATGTTTATGAATCAGAATTGTCACCATTCCTTTTGTTCTGAATGTATCATCAAACAAGTGGAAACAAAGATCGAAGAAAAAATGTCAACAGTGTCTTGTCCTGGTTTGGATTGCAAGGGTACGTTGGAACTTGAATCATGTATGCCATTGCTTTCTAAAACACTATTTGATAAGTGGAATGATGCATTGTGTGAAGCTCTTTTTGTTACTGTTCCTAAATTCTACTGTCCATTTAAGGATTGTTCTGCTATGTTGTTGGATGAGAATGAAGGGGTGGAAGATATTAGGGAATCTGAATGCCCTTTTTGTCATAGATTGTTTTGTGCAAGGTGTCATGTTCCTTGGCATCCAGGGATTGATTGTGAGGAGTACCAAACACTGAATGCGGATGAACGAGGGCATGATGATCTTCTTGTTAGAGAGCTTGCTAACGTGAAAAAATGGAGAAAGTGTCCCACATGCAAGTTCTTTGTTGAAAAAACTGAAGGTTGTTTGCATATTACTTGCAGGTGCCGGTTTGAGTTTTGCTATGCTTGTGGAGAACAATGGACTTCTACTCATGGTGGTTGCCAACCAAACGACTTTTACTTCTCTGTTGTCTCCGACGATGAAATTGACCCTAACGTCCCTGTCTCCGATGACAAGTATGCTGAAGCATTACAGTTTCAAGAAACCTTGTTGGCCTCTGTCATCACTTTTCACCAAAACCCTTCATCCTCTTCCTTCTTGGCACCACCACCATCATTACCGTGCGTAGCATCTTCATCAAAAACCGTTGCTCATGAGTTACAGTTTCATCAAATACTTATGCATTCAACACCGTTGCACTGCGTAGCATCTTCATCAAAGGCTGTTGATGTTGGCATTGTCATCAATGCAGATGAACCGTCTTCTCCAATCATAATTTGTGAGATTTGTGCAGAAACAAAAACGGCTGATGAAATGTTCAGGAATCAAATATGTTACCATTCATTTTGTTCTGAATGTGTTGTCAAACAAGTGGCTACGAAAATCCAAGACAACATAACAAATGTGTCTTGTCCTGGTTTGAACTGCAAAGGTGTGTTGGAGCTTGAATCTTGCAGGAAATTGCTTCCAACAGAATTGGTTGATAAGTGGAATGATGCATTATGCGAGGCTTTTTTTCTTACTGTTCCTAAATTCTATTGCCCTTTTAAGGATTGTTCTGCAATGTTGCTTGATGAGGATGAAGGAAGAGGAAGAGAAGATGTTAGGGAATCTGAGTGCCCTTCTTGTCATAGATTGTTTTGTGCAAGGTGTCATGTTCCTTGGCATCCTGGGATTGGTTGTGAGGAATATCAGAAATTGAATGCGGATGAAAGAGGAAGGGAAGATCTTCTTGTTAGAGAGCTGGCTAATCAGAACAAATGGAAAAGGTCTCCAAGATGTAGGTTCTATGTTGAGAAAAGGGATGGCTGTTTGCATATTACGTGCAGGTGCAAATTTGAGTTTTGCTATGCTTGCGGTGCAAAATGGACATCTTCTCATGGTGGTTGTCAAAGAAATTAG 1866 0.4084 MEEEQQQDFVPDISDDDDDDDDLDEYAEALQVEQTLADSLITSNSHSQIASSNSSPSPSLLCEASSSKTVDVAIVLNTEQIKLVTKQESNESSPSSSIIICEICTETKRTEEMFMNQNCHHSFCSECIIKQVETKIEEKMSTVSCPGLDCKGTLELESCMPLLSKTLFDKWNDALCEALFVTVPKFYCPFKDCSAMLLDENEGVEDIRESECPFCHRLFCARCHVPWHPGIDCEEYQTLNADERGHDDLLVRELANVKKWRKCPTCKFFVEKTEGCLHITCRCRFEFCYACGEQWTSTHGGCQPNDFYFSVVSDDEIDPNVPVSDDKYAEALQFQETLLASVITFHQNPSSSSFLAPPPSLPCVASSSKTVAHELQFHQILMHSTPLHCVASSSKAVDVGIVINADEPSSPIIICEICAETKTADEMFRNQICYHSFCSECVVKQVATKIQDNITNVSCPGLNCKGVLELESCRKLLPTELVDKWNDALCEAFFLTVPKFYCPFKDCSAMLLDEDEGRGREDVRESECPSCHRLFCARCHVPWHPGIGCEEYQKLNADERGREDLLVRELANQNKWKRSPRCRFYVEKRDGCLHITCRCKFEFCYACGAKWTSSHGGCQRN 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04452 621 FunFam RBR-type E3 ubiquitin transferase 235 306 - -
Mepo4g04452 621 FunFam RBR-type E3 ubiquitin transferase 411 496 - -
Mepo4g04452 621 SUPERFAMILY RING/U-box 172 238 - -
Mepo4g04452 621 SUPERFAMILY RING/U-box 560 619 - -
Mepo4g04452 621 CDD BRcat_RBR_unk 498 552 - -
Mepo4g04452 621 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 493 IPR013083 -
Mepo4g04452 621 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 179 IPR013083 -
Mepo4g04452 621 SMART ibrneu5 244 302 IPR002867 GO:0008270
Mepo4g04452 621 SMART ibrneu5 483 549 IPR002867 GO:0008270
Mepo4g04452 621 SMART ibrneu5 169 233 IPR002867 GO:0008270
Mepo4g04452 621 SMART ibrneu5 559 618 IPR002867 GO:0008270
Mepo4g04452 621 CDD BRcat_RBR_unk 184 236 - -
Mepo4g04452 621 ProSiteProfiles Zinc finger RING-type profile. 101 146 IPR001841 -
Mepo4g04452 621 SUPERFAMILY RING/U-box 244 303 - -
Mepo4g04452 621 SUPERFAMILY RING/U-box 487 554 - -
Mepo4g04452 621 CDD Rcat_RBR_unk 575 611 - -
Mepo4g04452 621 SUPERFAMILY RING/U-box 96 178 - -
Mepo4g04452 621 ProSiteProfiles Zinc finger RING-type profile. 415 460 IPR001841 -
Mepo4g04452 621 FunFam RBR-type E3 ubiquitin transferase 96 182 - -
Mepo4g04452 621 ProSiteProfiles TRIAD supradomain profile. 411 621 IPR044066 -
Mepo4g04452 621 Pfam IBR domain, a half RING-finger domain 499 549 IPR002867 GO:0008270
Mepo4g04452 621 Pfam IBR domain, a half RING-finger domain 252 302 IPR002867 GO:0008270
Mepo4g04452 621 Pfam IBR domain, a half RING-finger domain 186 233 IPR002867 GO:0008270
Mepo4g04452 621 Pfam IBR domain, a half RING-finger domain 572 618 IPR002867 GO:0008270
Mepo4g04452 621 CDD Rcat_RBR_unk 259 295 - -
Mepo4g04452 621 ProSiteProfiles TRIAD supradomain profile. 97 306 IPR044066 -
Mepo4g04452 621 SUPERFAMILY RING/U-box 410 492 - -
Mepo4g04452 621 FunFam RBR-type E3 ubiquitin transferase 551 621 - -
Mepo4g04452 621 SMART ring_2 101 148 IPR001841 -
Mepo4g04452 621 SMART ring_2 415 462 IPR001841 -
Mepo4g04452 621 ProSitePatterns Zinc finger RING-type signature. 119 128 IPR017907 -
Mepo4g04452 621 Gene3D - 230 336 - -
Mepo4g04452 621 Gene3D - 545 621 - -
Mepo4g04452 621 MobiDBLite consensus disorder prediction 1 25 - -
Mepo4g04452 621 ProSitePatterns Zinc finger RING-type signature. 433 442 IPR017907 -
Mepo4g04452 621 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 363 611 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04452 Mepo-Chr4 54278565 54283990 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04452 415 609 C3H Transcription Factor Family AT2G19610 30.348 1.81e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04452 K11975 - msyl:126634144 338.961