Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04449 ATGTCTGGTCCTGAAAAAGAAAAAGATCCAAGCAATTTTGATCTTCATGACATGCAACTTCAAGCACAACAACAACAAGTTTCACACCAAAATGTGGTTGATCACCCTCAACTAGTACAACAACAACAATTTCGAGACATGCCAATCAACATCACTTCTTCAATCGGTGATTTGGAAAGATGTAATCACAACCAAAATTCTAGAAATGAAGCTCTTTCTTCCCTTCAAGACCAAGATCCTAACCACCATCAACAAAGAAGAAGCAATTTTCGGCACTCGCAAGAACAGATTCAAGAAATGGAATCGTTCTTCAAGCAATGCCCTCGCCCTAATGGCAAGCAAAGGAAACAATTGAGTTGTGTGCTAGGTCTTACACCTACGCAAATCAAGTTCTGGTTTCAAAACAAGCGCAACCAAATTAAGACACAACAGGAACTTTACCAAAATGATATTTTGAGGGATGAGAATGAGAAGCTTCATGCTGAAAATGAGATCTATAAGGGGGCACTAAAAGACACTTTATGTGCAAATTGTACTGGTCCAACTTCTATTGGTGAAATGTCCTCTAACGACAAACAACTTAGAATTGAGAATGCTAGATTAAAGGTTGAGATTGAAATGTTGACAGGAAAAGTAATAAACGATGTAGATCTAGTGGGTTCCTCCTCTAAAATTGGTCAGATATCTACACCTGCATTTGAAATGGGAAGTGGTAGTGATATCTCTTCAAGCATGATAGAAGAACTGTATTGTGATGGCAATGACCCCTTAGGGTCCCTCTCAATTCCTAAGGATTTTGGCAAAGCAACGATTGTAGAACTTGCTGTGGTTTCTATGGAGGAACTCACAATGTTAACTCTTGCTGGATCCCCTTTATGGATTTCTACCAATGACACTGAGATTCTAAATGAAGTTGAATACCCTAGGGTTTTTCCCAAAAGTCCGAAACTCACAGGGTTAAAATCTGAATCTTCAAGAGAATCGGTTATTGTTTCCATGAATCATATCAATCTCATTGATATCCTTATGGATGTGAGTCAATGGTCAACTATGTTTCATGCGATTGTTTCAAAAGCATTGACACTTGAAGATCTATCACCTGGAGTGTCGGGGAACTACAATGGAGCCCTACAAGTGATGTCAGCTGATTTTCAGGTTCCTTCACCACTTGTTCCTGCTCGTGGAAACTATTTCGTTAGATATTGTAAGAAGCACCAAGATGGGATATGGGCAGTGGTTGATGTTTCCTTGGATCACCTGCGACCAAGTAGCAGTACAATGACACGAAGACGACCCTCTGGTTGTTTAATTCAAGAACTACCAAATGGTTGTTCAAAGGTTACATGGGTGGAGCATGTAGAAGTGGATGAAAACACAATAGTGTCAAATCCATTCTATGTATCTTTAATAACTTCGGGTCTTGCCTTTGGAGCTAAGAGATGGGTGACCTCATTAGATAGACAATGTGAACGTCTTGCTTGTTCAATGACAAACAACATACCTGTAGAAGACCATTGTGTGGTAAATAGTCTCCAAGGAAGGAAAAATTTGCTGCATTTGGCAGAGAGAATGAAAGTATGTTTTTATGCTGCCGTTGGTTCTTCTGTAGCAAGTTGTTGGGAGGTGTTAACATCTGATTGTGACGATGTAAGGGTCATGACCAAAACAAGTATTGGTGAACCTGGAACACCTACTGGTATTGTTCTCAGTGTTGGAACTTCTATTTGGCTTCCTGTTCTTCCAACGATGCTTTTTGATTTTCTTGGAAGTCAAAATTCAAGAAGTGAGTGGGATGTTCTTTCCGTTGGGGGTATAATTAAAGAAATGGAACACATAACACATGGTCGTGATCTTGGAAACTATGTCTCTTTATTTCATATCAGCAGGGCCAATTGCGACCAAAAAAATATGGTGGTACTTCAAGACAATAGCATTGATAGTACATGCTCACATATTATCTATGCTCCGGTTGGTATTGATTCTGTGAATGCAATCTTAAATGGTGGTGATCCAAATTTTGTTGTTTTGCTTCCCTCTGGTTTTGTTATTCTCCCCAATAGGGCACAATTGAGCAACACAGGACCTATGCTTAATTCTGTTGAACTTGGAGGTTGTCTATTGACAATTTCATTTCAATTTTTAGTTGATCCAAGTCCAACAAGAAGAATAGAAAATGACTCAATAGAATTTGCTGTCAAATTAGTTAAGAACACAGCCGAACGGATCAAAGTAGCATTCCTCGATGGCAACACCTAA 2256 0.3923 MSGPEKEKDPSNFDLHDMQLQAQQQQVSHQNVVDHPQLVQQQQFRDMPINITSSIGDLERCNHNQNSRNEALSSLQDQDPNHHQQRRSNFRHSQEQIQEMESFFKQCPRPNGKQRKQLSCVLGLTPTQIKFWFQNKRNQIKTQQELYQNDILRDENEKLHAENEIYKGALKDTLCANCTGPTSIGEMSSNDKQLRIENARLKVEIEMLTGKVINDVDLVGSSSKIGQISTPAFEMGSGSDISSSMIEELYCDGNDPLGSLSIPKDFGKATIVELAVVSMEELTMLTLAGSPLWISTNDTEILNEVEYPRVFPKSPKLTGLKSESSRESVIVSMNHINLIDILMDVSQWSTMFHAIVSKALTLEDLSPGVSGNYNGALQVMSADFQVPSPLVPARGNYFVRYCKKHQDGIWAVVDVSLDHLRPSSSTMTRRRPSGCLIQELPNGCSKVTWVEHVEVDENTIVSNPFYVSLITSGLAFGAKRWVTSLDRQCERLACSMTNNIPVEDHCVVNSLQGRKNLLHLAERMKVCFYAAVGSSVASCWEVLTSDCDDVRVMTKTSIGEPGTPTGIVLSVGTSIWLPVLPTMLFDFLGSQNSRSEWDVLSVGGIIKEMEHITHGRDLGNYVSLFHISRANCDQKNMVVLQDNSIDSTCSHIIYAPVGIDSVNAILNGGDPNFVVLLPSGFVILPNRAQLSNTGPMLNSVELGGCLLTISFQFLVDPSPTRRIENDSIEFAVKLVKNTAERIKVAFLDGNT 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04449 751 Pfam Homeodomain 87 141 IPR001356 GO:0003677
Mepo4g04449 751 Gene3D - 72 157 - -
Mepo4g04449 751 ProSiteProfiles START domain profile. 264 494 IPR002913 GO:0008289
Mepo4g04449 751 Pfam START domain 278 491 IPR002913 GO:0008289
Mepo4g04449 751 SUPERFAMILY Bet v1-like 514 712 - -
Mepo4g04449 751 CDD START_ArGLABRA2_like 268 490 - -
Mepo4g04449 751 SMART START_1 273 491 IPR002913 GO:0008289
Mepo4g04449 751 FunFam Homeobox-leucine zipper protein HDG1 73 159 - -
Mepo4g04449 751 Gene3D - 307 491 IPR023393 -
Mepo4g04449 751 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Mepo4g04449 751 SMART HOX_1 85 147 IPR001356 GO:0003677
Mepo4g04449 751 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 85 746 IPR042160 -
Mepo4g04449 751 CDD homeodomain 86 144 IPR001356 GO:0003677
Mepo4g04449 751 SUPERFAMILY Bet v1-like 267 492 - -
Mepo4g04449 751 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Mepo4g04449 751 MobiDBLite consensus disorder prediction 67 95 - -
Mepo4g04449 751 SUPERFAMILY Homeodomain-like 78 147 IPR009057 -
Mepo4g04449 751 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04449 Mepo-Chr4 54255371 54264044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04449 78 746 Homeobox Transcription Factor Family AT4G21750 52.617 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo4g04449 START 1.4e-39 CL0209