Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04448 ATGCGGGGTTCTAGAAAATCTAGAGCTAGATCAAGGCCTAACCCTTTGAAACAATCCAAATTGATTACAAGGAACTTGCAAGTTGTTTATAATAATCCTGAGGCAACTGACACATCTGAAGATGAATCACAACATGCAAGAACAACGACAAAAAGAAGCTTCGTTGAGGTCACTCTCTATCCTCATGTATCTGCAGCTTCTTTGGCTTCTCATAAGAGTTTCTCTGAGAAGTCGAAGACTGTAATAAGCAAAAAGGCATGTCTTTCAACACAACGTCAAATCAAGAAGAAAGTTGTTCCAACAATAACTTCTCCAAAAACAAGGAGACAACCTTCATCCAAATATCGAGGCGTTTGTTTGAGGCCATGGGGAAGATGGGCTGCTGAGATTCGTAATCCTTCAAAAAATGTTAGAATTTGGTTGGGAACTTACGATACTGCTGAAGAAGCTTCTCAAGCTTATGAATCCGAAAGGCTTCAAATTGAACTTGATGCTCAGACAACGAAAGCAAAAAGAGGCTTCAATAAGGGTTCTTCTGCAACCTCTCCAATTGCAACATTGAACAAGAACTCTTCTGCAGATGATGATGATGCCAATGCTTTAGTGTCAGAAAAATGTTCAACTACTAAAGTCTCTGAGAACTTGTTCATACAAACATCGCCTTCTTCCGTGCTTGAGTTGGATACCTTAGCATCCAATTTGATTGAGAAGGTTGATGTTCCATCAAACAATGTAGACGTTGTTGTAAATGAAGTGAGTGCAATGATGTCTTGTCAACTTCAAGAGCTAGAAATTCCAAATCCTACTGTTTTTAACCTGCATGAGCCAGTTGCTACTGAGAATCAGATTGGGACTGATCCCAATCTTGGTTTGGGATTTGATTTTGATCGGTTTAACATTGATGATTTTGGACAAGATTTTCAAGAATTTTGTGACTGTGGTGACTTAGGTGACTTCGAGGATATTCAAATTCATGGATTTGATGACAATGAACCTAGTGAGCTTCCTGATTTTGATTTTGGTGATATTGGTGATGATGACGAATTTCTTGGTTGGATTGATGTGCCCTTCCAACACAACATATATTTTCTCTAA 1095 0.3872 MRGSRKSRARSRPNPLKQSKLITRNLQVVYNNPEATDTSEDESQHARTTTKRSFVEVTLYPHVSAASLASHKSFSEKSKTVISKKACLSTQRQIKKKVVPTITSPKTRRQPSSKYRGVCLRPWGRWAAEIRNPSKNVRIWLGTYDTAEEASQAYESERLQIELDAQTTKAKRGFNKGSSATSPIATLNKNSSADDDDANALVSEKCSTTKVSENLFIQTSPSSVLELDTLASNLIEKVDVPSNNVDVVVNEVSAMMSCQLQELEIPNPTVFNLHEPVATENQIGTDPNLGLGFDFDRFNIDDFGQDFQEFCDCGDLGDFEDIQIHGFDDNEPSELPDFDFGDIGDDDEFLGWIDVPFQHNIYFL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04448 364 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Mepo4g04448 364 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Mepo4g04448 364 CDD AP2 113 154 IPR001471 GO:0003700|GO:0006355
Mepo4g04448 364 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 227 - -
Mepo4g04448 364 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Mepo4g04448 364 SMART rav1_2 114 181 IPR001471 GO:0003700|GO:0006355
Mepo4g04448 364 SUPERFAMILY DNA-binding domain 113 160 IPR016177 GO:0003677
Mepo4g04448 364 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Mepo4g04448 364 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Mepo4g04448 364 MobiDBLite consensus disorder prediction 30 49 - -
Mepo4g04448 364 MobiDBLite consensus disorder prediction 172 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04448 Mepo-Chr4 54242916 54244010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04448 5 354 AP2-EREBP Transcription Factor Family AT1G68550 26.431 1.66e-23 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo4g04448 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04448 - - mtr:25485503 397.512