Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04444 ATGGCGCAGCAAGCATCACCCTCATCCTCATCCCTCAGTCCTGACACTGCAGACGACTTTCACTTCTCTGTTTTCTACGATGATGAAGTAATCCCTCTAACCACTTCTCATCAAAACCTCTCATCCTCTCCCTCCACGTCACCATTACCACCGTGCGAATCTCCTTCTTCAAAATCCGTCGTTGAAGAGTCACTGTTCAAGGACTTGCTCAACACAGACCAAATAAAGTTCGCAACAGAAGAAGCAGATGATGTATCGTGTTCAATCATCATTTGTGAGATTTGCGCAGAATCAAAAAGGAATGAGGAGATGTTCATAATTCAAAGATGTTATCATTCCTTTTGTTCTGAATGTGTAATCAAACAAGTGGCCACAAAAATTCAAGACAACATGACAGTCGTGTCTTGTCCCGGTTTGAACTGCAAGGGTGTTTTGGAACTTGAATCTTGCAGAGCATTGCTTCCTAAAGAACTGATTGATAAGTGGAATGATGCATTGTGTGCAGCTCTTCCTAAAATCTATTGCCCCTTTAAGGATTGTTCAGCAATGCTGCTTGATGGGAATAAAAGGGGAGAAGAAAAAGATACTAGGAAATCTGAGTGCCCTTTTTGCCATAGGCCGTTTTGTGCAAAGTGTCACGTTCCTTGGCATCTTGGGATTAATTGTGAGGAGTTTCAGAAATTGAATGTGGATGAAAGAGGGAGGGAAGACATTCTTCTAGTGAAGCTTGCTAATAAGAAAAAATGGAGAAGGTTCCCAAATGCAATATTTATATTGAAAGATATGAAGGCTGTTTTCATATCATCTGCAGGTGCTTATATGAGTTTTGCTATGCTTGTGGAGAACAATGGACATTTGGTCATGGTGGCTGCCTAA 876 0.4132 MAQQASPSSSSLSPDTADDFHFSVFYDDEVIPLTTSHQNLSSSPSTSPLPPCESPSSKSVVEESLFKDLLNTDQIKFATEEADDVSCSIIICEICAESKRNEEMFIIQRCYHSFCSECVIKQVATKIQDNMTVVSCPGLNCKGVLELESCRALLPKELIDKWNDALCAALPKIYCPFKDCSAMLLDGNKRGEEKDTRKSECPFCHRPFCAKCHVPWHLGINCEEFQKLNVDERGREDILLVKLANKKKWRRFPNAIFILKDMKAVFISSAGAYMSFAMLVENNGHLVMVAA 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04444 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 174 IPR013083 -
Mepo4g04444 291 ProSiteProfiles Zinc finger RING-type profile. 92 137 IPR001841 -
Mepo4g04444 291 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 44 254 IPR031127 GO:0004842|GO:0016567
Mepo4g04444 291 ProSitePatterns Zinc finger RING-type signature. 110 119 IPR017907 -
Mepo4g04444 291 SUPERFAMILY RING/U-box 170 227 - -
Mepo4g04444 291 ProSiteProfiles TRIAD supradomain profile. 88 291 IPR044066 -
Mepo4g04444 291 FunFam RBR-type E3 ubiquitin transferase 87 172 - -
Mepo4g04444 291 CDD BRcat_RBR_unk 171 225 - -
Mepo4g04444 291 SMART ibrneu5 160 222 IPR002867 GO:0008270
Mepo4g04444 291 MobiDBLite consensus disorder prediction 36 57 - -
Mepo4g04444 291 Pfam IBR domain, a half RING-finger domain 172 222 IPR002867 GO:0008270
Mepo4g04444 291 SUPERFAMILY RING/U-box 89 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04444 Mepo-Chr4 54216674 54217717 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04444 92 227 C3H Transcription Factor Family AT2G19610 30.345 1.61e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04444 K11975 - qsu:112001859 230.335