Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04439 ATGGAAGAAAAGGAACAACAACACACCAAAACACTCATTTCTGCTCTCAACTTTCTCTCTCGCGACGTTCCTCTTCCTTCTCACCTTCTCGATTCCGTTTCTTCCATCTATCGTCTCAACAACAATCTCAATGGCGATGTAGGGAGTTCTGGAGATGATTTAATAACAGATCTTGAAGATGCATTATCGAAACAACGCCCGAAATGTGCATCAGGTTTCAAGTTGGAGGAAGCAATGGAAAGCCGTCATCAAAATCAGATTCGGCATCGGTTAAATGAGCTTCAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTTTATGGACTGAAGTTAGCAGAGTTGCAGTCAAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTGAATGTGCATATCCTGACCGGAAATTGTTTGATTGGGGCATGATGAGATTACGCCGTCCATTGTATGGAGTTGGAGATCCATTTGCCATGGATGCTGATAATCAAGTGAGGAAGAGACGGGATTCTGAGAGACTGTCAAGATTAGAAGAGGTGGAGAAAAATAATATAGAGACTACAAAAAGAAGGTTTTTTGCAGAAATACTAAATTCTGTCCGCGAGCTCCAGTTACAAATTCAAGCTTCTCTGAAGCGGAGAAAACAGAGGAATGATGGTATCCAGGCATGGCATGGAAGGCAAAGACAAAGGGCAACCCGGGCAGAGAAATTGAGATTTCAAGCCTTGAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTGTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACTTCAAACATTCAGATGGCATTGAACCCTTGGAAGATTCCGAAGCTGATTTACCTGAGTCAGATGCTTCAAAGAATGGAATTTATAAGGAATCACCTGTTGATGATGATATAGATGCGATAGATTCTGATCACAATGATGGTGACTCTAACGATTTACTTGAAGGTCAGCGACAATACAATTCTGCCATACACTCAATTCAGGAAAAGGTAACCGAGCAACCGTCTATACTTCAAGGTGGAGAATTAAGATCATATCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTTAATAACAACTTAAATGGGATTTTGGCTGATGAAATGGGGCTTGGGAAAACAATTCAAACGATTTCTCTCATAGCACATCTTTTCGAATACAAAGGTGTGACTGGTCCGCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAACTGGATCATTGAATTCTCAACGTGGGCTCCTAGCATTAAAACTATTCTTTATGATGGACGGATGGATGAGAGAAAAGCAATAAAGGAAGAATATTCAGGAGAGGGGAAATTTAATGTTATGATTACACATTATGATCTTATAATGAGAGACAAAGCGTTTCTCAAGAAAATTAAATGGATCTACTTAATTGTAGATGAAGGTCATCGGTTGAAGAATCACGAGTCTGTTCTAGCAAAAACCTTGGATAATAGCTATCACATCCAACGAAGACTTTTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCAAACATTTTCAACTCCGTTCAAAATTTCGAGGACTGGTTCAATGCCCCCTTTGCAGACCGAGTTGATGTCTCTCTATCAGATGAAGAACAACTATTAATCATTCGGCGTCTACATCAAGTAATCAGGCCCTTCATATTAAGAAGGAAAAAAAATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAGGTTTATTATCAACAAGTTACTGACGTAGGCAGAGTTGGTTTGGACAACGGTACTGGAAAATCGAAAAGTCTACAGAACTTAACGATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAAATGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACCGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACACTCTCGAAGTTTATTTACGACTTCATGATTTCAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAAGAAAGAGGCTCTCTACTACGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTAAGCACCCGGGCAGGCGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTCGACAGCGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGTATTGGACAAAAAAAGGAAGTTCGGGTTTTCGTGTTGGTTAGTGTGGGGTCAGTTGAAGAGGTGATTTTAGAACGTGCAAAACAAAAGATGGGTATAGACGCCAAAGTCATTCAGGCAGGACTTTTCAATACAACTTCGACAGCCCAGGACAGAAGAGAAATGTTGGAGGTGATTATGCGTCGAGGTTCAAGCTCACTTGGGGCAGATGTGCCTAGCGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTCGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAACTACAGATCACGTCTCATGGAAGAGCATGAATTGCCAGAATGGGTGTATGCTCCAATTAAAAAGGATGACAAAGCCAAAGATTTCAACAGTGGCGTTACTGGAAAGCGGAAAAGAAAAGATGTGATATATGCTGATACATTGAGTGAGCTACAATGGATGCAGGCTATGGAGAATGGTGGGGACATATCAAAGCTTTCAGCTAAAGGGAAAAGAAGAGAGTCAAGAGACCACCTCTCATCTGACAGCATAGCACAAGCCAGTGATAATACGGGGGCAGATGAAAGCATATTACAGTCGAGGGCAAAAATTGTCCCTACAGAAAACGACAGAACTTGGGAAGATAGTTTCCATGTCACTCCTTTCTCAAAGAGGTTCAAGCCTGAAGGAACAAATTTCCAGAAACATGCACACGAGGATGTCAGTGGAAGTGGATTGGACCAGCCTGTTTTCTCCTGGAATATTCACAAAAAGAAGAGATCAAGCCATCTTGGTCAGGGTTCAGCATCTGAGAGTAGAGGGCATAATTCAAATGGAAGAGCAAACGGGAACTGA 3252 0.417 MEEKEQQHTKTLISALNFLSRDVPLPSHLLDSVSSIYRLNNNLNGDVGSSGDDLITDLEDALSKQRPKCASGFKLEEAMESRHQNQIRHRLNELQELPSSRGEDLQTKCLLELYGLKLAELQSKVRSDVSSEYWLNVECAYPDRKLFDWGMMRLRRPLYGVGDPFAMDADNQVRKRRDSERLSRLEEVEKNNIETTKRRFFAEILNSVRELQLQIQASLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTVLLEETNKLLVNLGAAVQRQKDFKHSDGIEPLEDSEADLPESDASKNGIYKESPVDDDIDAIDSDHNDGDSNDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLFEYKGVTGPHLIVAPKAVLPNWIIEFSTWAPSIKTILYDGRMDERKAIKEEYSGEGKFNVMITHYDLIMRDKAFLKKIKWIYLIVDEGHRLKNHESVLAKTLDNSYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKNEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEVIMRRGSSSLGADVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPEWVYAPIKKDDKAKDFNSGVTGKRKRKDVIYADTLSELQWMQAMENGGDISKLSAKGKRRESRDHLSSDSIAQASDNTGADESILQSRAKIVPTENDRTWEDSFHVTPFSKRFKPEGTNFQKHAHEDVSGSGLDQPVFSWNIHKKKRSSHLGQGSASESRGHNSNGRANGN 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04439 1083 MobiDBLite consensus disorder prediction 964 979 - -
Mepo4g04439 1083 Pfam Snf2-ATP coupling, chromatin remodelling complex 894 953 IPR029295 GO:0042393
Mepo4g04439 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 857 IPR027417 -
Mepo4g04439 1083 FunFam Chromatin structure-remodeling complex protein SYD 367 610 - -
Mepo4g04439 1083 SMART SnAC_2 893 953 IPR029295 GO:0042393
Mepo4g04439 1083 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 690 851 IPR001650 -
Mepo4g04439 1083 MobiDBLite consensus disorder prediction 1035 1083 - -
Mepo4g04439 1083 PANTHER SNF2/RAD54 HELICASE FAMILY 80 971 - -
Mepo4g04439 1083 MobiDBLite consensus disorder prediction 296 347 - -
Mepo4g04439 1083 MobiDBLite consensus disorder prediction 1064 1083 - -
Mepo4g04439 1083 SMART ultradead3 372 565 IPR014001 -
Mepo4g04439 1083 FunFam Probable ATP-dependent DNA helicase CHR12 607 906 - -
Mepo4g04439 1083 Coils Coil 891 911 - -
Mepo4g04439 1083 CDD SF2_C_SNF 678 811 - -
Mepo4g04439 1083 Gene3D - 367 610 IPR038718 -
Mepo4g04439 1083 MobiDBLite consensus disorder prediction 980 996 - -
Mepo4g04439 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 601 IPR027417 -
Mepo4g04439 1083 SMART helicmild6 716 800 IPR001650 -
Mepo4g04439 1083 Gene3D - 611 831 IPR027417 -
Mepo4g04439 1083 MobiDBLite consensus disorder prediction 963 996 - -
Mepo4g04439 1083 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 388 554 IPR014001 -
Mepo4g04439 1083 Pfam Helicase conserved C-terminal domain 687 800 IPR001650 -
Mepo4g04439 1083 Pfam SNF2-related domain 379 667 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04439 Mepo-Chr4 54162271 54170680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04439 683 858 RAD5 or RAD16-like Gene Family AT5G43530 34.270 5.98e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo4g04439 SNF2_N 3.5e-66 CL0023