Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mepo4g04439 | ATGGAAGAAAAGGAACAACAACACACCAAAACACTCATTTCTGCTCTCAACTTTCTCTCTCGCGACGTTCCTCTTCCTTCTCACCTTCTCGATTCCGTTTCTTCCATCTATCGTCTCAACAACAATCTCAATGGCGATGTAGGGAGTTCTGGAGATGATTTAATAACAGATCTTGAAGATGCATTATCGAAACAACGCCCGAAATGTGCATCAGGTTTCAAGTTGGAGGAAGCAATGGAAAGCCGTCATCAAAATCAGATTCGGCATCGGTTAAATGAGCTTCAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCCTGCTTGAACTTTATGGACTGAAGTTAGCAGAGTTGCAGTCAAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTGAATGTGCATATCCTGACCGGAAATTGTTTGATTGGGGCATGATGAGATTACGCCGTCCATTGTATGGAGTTGGAGATCCATTTGCCATGGATGCTGATAATCAAGTGAGGAAGAGACGGGATTCTGAGAGACTGTCAAGATTAGAAGAGGTGGAGAAAAATAATATAGAGACTACAAAAAGAAGGTTTTTTGCAGAAATACTAAATTCTGTCCGCGAGCTCCAGTTACAAATTCAAGCTTCTCTGAAGCGGAGAAAACAGAGGAATGATGGTATCCAGGCATGGCATGGAAGGCAAAGACAAAGGGCAACCCGGGCAGAGAAATTGAGATTTCAAGCCTTGAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTGTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACTTCAAACATTCAGATGGCATTGAACCCTTGGAAGATTCCGAAGCTGATTTACCTGAGTCAGATGCTTCAAAGAATGGAATTTATAAGGAATCACCTGTTGATGATGATATAGATGCGATAGATTCTGATCACAATGATGGTGACTCTAACGATTTACTTGAAGGTCAGCGACAATACAATTCTGCCATACACTCAATTCAGGAAAAGGTAACCGAGCAACCGTCTATACTTCAAGGTGGAGAATTAAGATCATATCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTTAATAACAACTTAAATGGGATTTTGGCTGATGAAATGGGGCTTGGGAAAACAATTCAAACGATTTCTCTCATAGCACATCTTTTCGAATACAAAGGTGTGACTGGTCCGCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAACTGGATCATTGAATTCTCAACGTGGGCTCCTAGCATTAAAACTATTCTTTATGATGGACGGATGGATGAGAGAAAAGCAATAAAGGAAGAATATTCAGGAGAGGGGAAATTTAATGTTATGATTACACATTATGATCTTATAATGAGAGACAAAGCGTTTCTCAAGAAAATTAAATGGATCTACTTAATTGTAGATGAAGGTCATCGGTTGAAGAATCACGAGTCTGTTCTAGCAAAAACCTTGGATAATAGCTATCACATCCAACGAAGACTTTTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCAAACATTTTCAACTCCGTTCAAAATTTCGAGGACTGGTTCAATGCCCCCTTTGCAGACCGAGTTGATGTCTCTCTATCAGATGAAGAACAACTATTAATCATTCGGCGTCTACATCAAGTAATCAGGCCCTTCATATTAAGAAGGAAAAAAAATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAGGTTTATTATCAACAAGTTACTGACGTAGGCAGAGTTGGTTTGGACAACGGTACTGGAAAATCGAAAAGTCTACAGAACTTAACGATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAAATGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACCGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACACTCTCGAAGTTTATTTACGACTTCATGATTTCAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAAGAAAGAGGCTCTCTACTACGGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTAAGCACCCGGGCAGGCGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTCGACAGCGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGTATTGGACAAAAAAAGGAAGTTCGGGTTTTCGTGTTGGTTAGTGTGGGGTCAGTTGAAGAGGTGATTTTAGAACGTGCAAAACAAAAGATGGGTATAGACGCCAAAGTCATTCAGGCAGGACTTTTCAATACAACTTCGACAGCCCAGGACAGAAGAGAAATGTTGGAGGTGATTATGCGTCGAGGTTCAAGCTCACTTGGGGCAGATGTGCCTAGCGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTCGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAACTACAGATCACGTCTCATGGAAGAGCATGAATTGCCAGAATGGGTGTATGCTCCAATTAAAAAGGATGACAAAGCCAAAGATTTCAACAGTGGCGTTACTGGAAAGCGGAAAAGAAAAGATGTGATATATGCTGATACATTGAGTGAGCTACAATGGATGCAGGCTATGGAGAATGGTGGGGACATATCAAAGCTTTCAGCTAAAGGGAAAAGAAGAGAGTCAAGAGACCACCTCTCATCTGACAGCATAGCACAAGCCAGTGATAATACGGGGGCAGATGAAAGCATATTACAGTCGAGGGCAAAAATTGTCCCTACAGAAAACGACAGAACTTGGGAAGATAGTTTCCATGTCACTCCTTTCTCAAAGAGGTTCAAGCCTGAAGGAACAAATTTCCAGAAACATGCACACGAGGATGTCAGTGGAAGTGGATTGGACCAGCCTGTTTTCTCCTGGAATATTCACAAAAAGAAGAGATCAAGCCATCTTGGTCAGGGTTCAGCATCTGAGAGTAGAGGGCATAATTCAAATGGAAGAGCAAACGGGAACTGA | 3252 | 0.417 | MEEKEQQHTKTLISALNFLSRDVPLPSHLLDSVSSIYRLNNNLNGDVGSSGDDLITDLEDALSKQRPKCASGFKLEEAMESRHQNQIRHRLNELQELPSSRGEDLQTKCLLELYGLKLAELQSKVRSDVSSEYWLNVECAYPDRKLFDWGMMRLRRPLYGVGDPFAMDADNQVRKRRDSERLSRLEEVEKNNIETTKRRFFAEILNSVRELQLQIQASLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTVLLEETNKLLVNLGAAVQRQKDFKHSDGIEPLEDSEADLPESDASKNGIYKESPVDDDIDAIDSDHNDGDSNDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLFEYKGVTGPHLIVAPKAVLPNWIIEFSTWAPSIKTILYDGRMDERKAIKEEYSGEGKFNVMITHYDLIMRDKAFLKKIKWIYLIVDEGHRLKNHESVLAKTLDNSYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKNEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEVIMRRGSSSLGADVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPEWVYAPIKKDDKAKDFNSGVTGKRKRKDVIYADTLSELQWMQAMENGGDISKLSAKGKRRESRDHLSSDSIAQASDNTGADESILQSRAKIVPTENDRTWEDSFHVTPFSKRFKPEGTNFQKHAHEDVSGSGLDQPVFSWNIHKKKRSSHLGQGSASESRGHNSNGRANGN | 1083 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mepo4g04439 | 1083 | MobiDBLite | consensus disorder prediction | 964 | 979 | - | - | |
Mepo4g04439 | 1083 | Pfam | Snf2-ATP coupling, chromatin remodelling complex | 894 | 953 | IPR029295 | GO:0042393 | |
Mepo4g04439 | 1083 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 603 | 857 | IPR027417 | - | |
Mepo4g04439 | 1083 | FunFam | Chromatin structure-remodeling complex protein SYD | 367 | 610 | - | - | |
Mepo4g04439 | 1083 | SMART | SnAC_2 | 893 | 953 | IPR029295 | GO:0042393 | |
Mepo4g04439 | 1083 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 690 | 851 | IPR001650 | - | |
Mepo4g04439 | 1083 | MobiDBLite | consensus disorder prediction | 1035 | 1083 | - | - | |
Mepo4g04439 | 1083 | PANTHER | SNF2/RAD54 HELICASE FAMILY | 80 | 971 | - | - | |
Mepo4g04439 | 1083 | MobiDBLite | consensus disorder prediction | 296 | 347 | - | - | |
Mepo4g04439 | 1083 | MobiDBLite | consensus disorder prediction | 1064 | 1083 | - | - | |
Mepo4g04439 | 1083 | SMART | ultradead3 | 372 | 565 | IPR014001 | - | |
Mepo4g04439 | 1083 | FunFam | Probable ATP-dependent DNA helicase CHR12 | 607 | 906 | - | - | |
Mepo4g04439 | 1083 | Coils | Coil | 891 | 911 | - | - | |
Mepo4g04439 | 1083 | CDD | SF2_C_SNF | 678 | 811 | - | - | |
Mepo4g04439 | 1083 | Gene3D | - | 367 | 610 | IPR038718 | - | |
Mepo4g04439 | 1083 | MobiDBLite | consensus disorder prediction | 980 | 996 | - | - | |
Mepo4g04439 | 1083 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 352 | 601 | IPR027417 | - | |
Mepo4g04439 | 1083 | SMART | helicmild6 | 716 | 800 | IPR001650 | - | |
Mepo4g04439 | 1083 | Gene3D | - | 611 | 831 | IPR027417 | - | |
Mepo4g04439 | 1083 | MobiDBLite | consensus disorder prediction | 963 | 996 | - | - | |
Mepo4g04439 | 1083 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 388 | 554 | IPR014001 | - | |
Mepo4g04439 | 1083 | Pfam | Helicase conserved C-terminal domain | 687 | 800 | IPR001650 | - | |
Mepo4g04439 | 1083 | Pfam | SNF2-related domain | 379 | 667 | IPR000330 | GO:0005524|GO:0140658 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mepo4g04439 | Mepo-Chr4 | 54162271 | 54170680 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mepo4g04439 | 683 | 858 | RAD5 or RAD16-like Gene Family | AT5G43530 | 34.270 | 5.98e-21 | 97.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Mepo4g04439 | SNF2_N | 3.5e-66 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mepo4g04439 | - | - | gmx:100786280 | 1837.39 |