Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04435 ATGGATAAAGGTGGTGACGCTGGTCAGAAACAATTAACCATGGAAGAAGCAATAGCGTTTGTCAGTGATGTAAAAGTTAAGTTTCAAGACAAGAGGGAAAAGTATGATAAATTTTTGAAAGTCCTAGGTGATTACAGGGCTCAAAGAATTGACATAGGAGGTGTCACAACAAGAATAGAGGAGCTGTTTAAAGGGCATTCAGATTTAATTTTAAAATTCAAATACTTTTTGCCAAACCGATCTGAAATCAGTGATGACACCGAAGAAAAGGAAGAAGACACTGATGAACAAAACCCACCTGATAGATTAGGGTCAGAAGTTAAACTTATGTCTCAAAAGGCTGATACAATATTAGGGAATTTGGAGGAGAAGAAGCAAATATAA 384 0.362 MDKGGDAGQKQLTMEEAIAFVSDVKVKFQDKREKYDKFLKVLGDYRAQRIDIGGVTTRIEELFKGHSDLILKFKYFLPNRSEISDDTEEKEEDTDEQNPPDRLGSEVKLMSQKADTILGNLEEKKQI 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04435 127 ProSiteProfiles PAH domain profile. 10 80 IPR003822 GO:0006355
Mepo4g04435 127 FunFam Paired amphipathic helix protein Sin3 16 78 - -
Mepo4g04435 127 Gene3D Paired amphipathic helix 16 78 IPR036600 GO:0006355
Mepo4g04435 127 MobiDBLite consensus disorder prediction 83 127 - -
Mepo4g04435 127 Pfam Paired amphipathic helix repeat 33 77 IPR003822 GO:0006355
Mepo4g04435 127 SUPERFAMILY PAH2 domain 9 79 IPR036600 GO:0006355
Mepo4g04435 127 PANTHER SIN3B-RELATED 12 95 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04435 Mepo-Chr4 54147170 54147885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04435 1 84 WRKY Transcription Factor Family AT4G12020 42.857 6.99e-15 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo4g04435 PAH 1.1e-13 No_clan