Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04434 ATGAACAGCTCCAGTAGAACAAAACCCTTGATTGGTGATGCAATGGAGTTTATAAAGGATGTAAAAGTTGTGTTTCAAGATAGGAAGGAAAAGTTTAATGAATTCATGAAACTCCTACATGATTTCAGGGCCAAAAGAATTGATAGAAGAGTTGTGAAAGAAGGAGTTACGGAGTTGTTTAAAGGGCATCAAGATTTAATTTCAAGATTCAACATCTTCTTGCCACCAGGAGATGAAATCCCACTTCTATTCTTCTTGCCACCAGGATATGAATTCCCACTTCTATTCCCAATGTCGTTTGCAACAGCAGTTAAAGTTGCATTTCACGATAAGATGGAAAAGTATGATGAATTCTTGAAACTCGTAGTTGATTACAATGCCAAAAGAATTGATATGAGAGTTTTCAAAGAAGGAATGATGGAGTTGTTTAAAGACCATAAAGATTTACTTTTGGGACTCAACACTTGGTTGCCAGAGGGACACGAAATCTCACTTCCATTGGATGGTGATGAACAACAAGGTGATGGATCGGCGCTCAAAGATGAATCAGCACTCGCAGATGCAACAAAGTTGTTTGCAACAGCAGTTAAAGTTGCATTTCAAGATAAGATGGAAAAGTATGATGAATTCTTAAAACTCGTAGATGATTGTCGTTTCAAAAGAATTGATATGAGAGTTTTTAAAGAAGGAATGATGGAGTTGTTTAAAGACCATAAAGATTTACTTTTGGGACTCAACACTTGGTTGCCAGAGGGACACAAAATCTCACTTCCATTGGAGGGTGATGAAGAACAAGGTGAAGATGGATTAGAGTTGAAAGATGCTGAACAACAAGGTGATGGAGTAGAGTACAAAGATGAACTTCAAGTTGATGAAGTGGCACTCAAAGATGAGCAGAAAGATGACGAACAATAA 915 0.3738 MNSSSRTKPLIGDAMEFIKDVKVVFQDRKEKFNEFMKLLHDFRAKRIDRRVVKEGVTELFKGHQDLISRFNIFLPPGDEIPLLFFLPPGYEFPLLFPMSFATAVKVAFHDKMEKYDEFLKLVVDYNAKRIDMRVFKEGMMELFKDHKDLLLGLNTWLPEGHEISLPLDGDEQQGDGSALKDESALADATKLFATAVKVAFQDKMEKYDEFLKLVDDCRFKRIDMRVFKEGMMELFKDHKDLLLGLNTWLPEGHKISLPLEGDEEQGEDGLELKDAEQQGDGVEYKDELQVDEVALKDEQKDDEQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04434 304 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Mepo4g04434 304 Gene3D Paired amphipathic helix 188 250 IPR036600 GO:0006355
Mepo4g04434 304 Gene3D Paired amphipathic helix 97 158 IPR036600 GO:0006355
Mepo4g04434 304 MobiDBLite consensus disorder prediction 258 284 - -
Mepo4g04434 304 SUPERFAMILY PAH2 domain 190 251 IPR036600 GO:0006355
Mepo4g04434 304 SUPERFAMILY PAH2 domain 5 76 IPR036600 GO:0006355
Mepo4g04434 304 ProSiteProfiles PAH domain profile. 182 252 IPR003822 GO:0006355
Mepo4g04434 304 SUPERFAMILY PAH2 domain 96 159 IPR036600 GO:0006355
Mepo4g04434 304 ProSiteProfiles PAH domain profile. 86 160 IPR003822 GO:0006355
Mepo4g04434 304 PANTHER SIN3B-RELATED 7 82 IPR039774 GO:0003714
Mepo4g04434 304 FunFam Paired amphipathic helix protein Sin3 13 75 - -
Mepo4g04434 304 ProSiteProfiles PAH domain profile. 6 77 IPR003822 GO:0006355
Mepo4g04434 304 Pfam Paired amphipathic helix repeat 30 74 IPR003822 GO:0006355
Mepo4g04434 304 Pfam Paired amphipathic helix repeat 113 157 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04434 Mepo-Chr4 54131731 54132645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04434 192 262 WRKY Transcription Factor Family AT4G12020 40.845 5.39e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo4g04434 PAH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04434 K11644 - cam:101488742 217.624