Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04433 ATGAACAGCTCAAGAAGAACAGTTCCCTTGATTGACGATGCAAGGGCGCTTGTAAAGGACGTAAAAGCTGTGTTTCAAGATAAGAGGGAAAAGTATGATGAATTCGTGAAACTCCTACAAGATTTCGGTGCCAAAAGAATTGGTAGAAGAGTTGTCAAAAAAGGAGTTACCGAGTTGTTCAAAGAACATCAAGATTTAATTTCAAGATTCAACATCTTCTTGCCACCAGGAGATGAAATCCCACTTCCATTGGATGATGATTTACAACAACGTGATCGATCAACGCTCGAAGATGAAGCAATGGCGTTTTTAACAGCAGTTAAGGTTACATTTGAAGATAAGATGGAAAAGTTCAATGAATTCTTGAAACTCCTAGCTGATTACGGTGCCAAAAGAATTGATGTAAGAGTTGTCAAAGAAGGAATGATGGAGTTGTTTAAAGAGCATAAAAATTTACTTTCTGGATTTAACACCTTCTTGCCAGAGGGACACAAAATCCCACTTCCTTTGGATGGTGATGAACAACAACGTGATCGATCACCGCTCAATGATGAAGCAATGGCGTTTTTAACAACAGTTAAGGTTACATTTAAAGATAAGATGGAAAAGTTCAATGAATTCTTGAAACTCCTAGCTGATTACCGTGCCGAAAGAATTGATGTAAGAGTTGTCAAAGAAGGAATGATGGAGTTGTTTAAAGACCATAAAAATTTACTTTCGGGATTTAACACCTTGTCAGAGGGACACAAAATCTCACTTCCATAA 765 0.3752 MNSSRRTVPLIDDARALVKDVKAVFQDKREKYDEFVKLLQDFGAKRIGRRVVKKGVTELFKEHQDLISRFNIFLPPGDEIPLPLDDDLQQRDRSTLEDEAMAFLTAVKVTFEDKMEKFNEFLKLLADYGAKRIDVRVVKEGMMELFKEHKNLLSGFNTFLPEGHKIPLPLDGDEQQRDRSPLNDEAMAFLTTVKVTFKDKMEKFNEFLKLLADYRAERIDVRVVKEGMMELFKDHKNLLSGFNTLSEGHKISLP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04433 254 PANTHER SIN3B-RELATED 7 87 IPR039774 GO:0003714
Mepo4g04433 254 FunFam Paired amphipathic helix protein Sin3 185 245 - -
Mepo4g04433 254 SUPERFAMILY PAH2 domain 182 244 IPR036600 GO:0006355
Mepo4g04433 254 ProSiteProfiles PAH domain profile. 179 249 IPR003822 GO:0006355
Mepo4g04433 254 SUPERFAMILY PAH2 domain 11 76 IPR036600 GO:0006355
Mepo4g04433 254 SUPERFAMILY PAH2 domain 95 162 IPR036600 GO:0006355
Mepo4g04433 254 Pfam Paired amphipathic helix repeat 116 160 IPR003822 GO:0006355
Mepo4g04433 254 Pfam Paired amphipathic helix repeat 202 244 IPR003822 GO:0006355
Mepo4g04433 254 Pfam Paired amphipathic helix repeat 30 74 IPR003822 GO:0006355
Mepo4g04433 254 Gene3D Paired amphipathic helix 185 245 IPR036600 GO:0006355
Mepo4g04433 254 Gene3D Paired amphipathic helix 99 161 IPR036600 GO:0006355
Mepo4g04433 254 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Mepo4g04433 254 ProSiteProfiles PAH domain profile. 6 77 IPR003822 GO:0006355
Mepo4g04433 254 ProSiteProfiles PAH domain profile. 92 163 IPR003822 GO:0006355
Mepo4g04433 254 FunFam Paired amphipathic helix protein Sin3 13 75 - -
Mepo4g04433 254 FunFam Paired amphipathic helix protein Sin3 99 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04433 Mepo-Chr4 54128634 54129398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04433 165 253 WRKY Transcription Factor Family AT4G12020 35.556 2.92e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo4g04433 PAH 6.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04433 K11644 - mtr:11427883 283.108