Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04395 ATGGAACCGGGAACGAGAATTGGTAGTCCTTCTGGGGTTGTGGTGAAGAATAGAAGCTCTTCTGGGTGTTTGATTGTTAGGAAGAAAGGGGATGGTTTGGGTGGTGGTGTTGGTGTTGGTGGTTCGAGTTCGCGGAAGCAGTTTGATTCCAAGAAAATAAGGAAAAAGGTGAAGGTGGAGGTTGATTCGAGTGATTCAGAATCGAGTGGGGAGTTAGTGATGCCGTCTGGTAGGAGGCTTGGCCCGGAGACAATTCGAGTTTGTAATAGTTTGAGTGCTCTTGAGCGAGGTGGTGGTAATGTTGGTGGGGGGGAGATTAGTAGGAAGAGGGAGAGGATGGAGCAGATTCGGCGTAATGGGGATGGTATGGTTGAGGGGAATGGGTTGGAGAGGAGGGAGAAGAAAGTTAAATTGGATGTGTTTGATTTTGATGAGTATGATGGAGTGGGTAAGGAAAGGATGAGGAGGCAGTTTGATAATGACAGGGTTGGTTTAGGAGGAGGAAGGTTTATGGGAACAATGCACCCTGCTAGAGGTAGTGTTGATAGGGAAATTGAAACTGGTTCAAGCAGACACATTGTTGATAAGAGAAAAAAAGCGTATTACGACAGGGCAATTGGCTTGCATCCCGGAGACGGCAGTGAACATAGTAGGATAAAGATGAAAAGGGATGGAACTCAGCCTCCTCTGTCCACGTTGAAGGAGAAGTTTAAACCCGACGAGTCCATTAGGGTTCAGGGAAAAAATGGTGTTTTGAAGGTGATGGTTAATAAGAAGAAGGTGGGTGCGTCAGTAGAACGCTATGAACAACGTAAACCAGTAGAAAGCAAACAAAGTTTAAGGGCTGAGGGCACTTCTAAGAGGAGTGTTCCGATCCATCCTTCATCACACTTAGAAACAAAATCTGCTGAGAAACAGGGTTTACTTGTTAGGCCAGAGAAGAAACAGACAACAACAAGAAAATCCTTGTCAAGTAAGGAGGACAGCAAGGGAAAGGAGCAGGATTCAGATGACAATGACACATCAATGAATTTGGAAGTAAAAAATATTAAAGCTCACACACCTTCAAAAAAGATAACCTCTGAAAATGAACAGACTCCTGTACATGACAAGCTCCCAACTACAAAGTCGAGTGAAGGGAAAATCAGGCGAGGTAGTGGCACAGAAAAGCAGAAACTACGAGAACAAATACGGGAGATGCTTCTGAATAAAGGCTGGACCATAGACTATCGCCCACGGAGGAATAGAGACTATTTAGATGCAGTTTACATTAATCCTGGGGGAACAGCTTATTGGTCCATCATCAAGGCCTATGATGCACTTCAAAAGCAACTGATTGAGGATGAGCGAGCGGCCAAAGGGGAGAGTTCTTCTTTTGCTCCCATTGCTGATGACGTGCTCAGTCAATTAACAAGGAAAACTCGGAAGAAGATGGAGAAAGATTTGAAGATGAAGAAGAAGAAGCAAAGAATTGATGACATGGATAGCGGAAAAGAACGGCAGATTAAAAGAACTTCTGGCAAAAAGCATCACATGAATAGCATTGATAGTGATAGCAATGAAGACAAGTTAAGCTCCTTTATCAAGCAACAAGGAAGTAAATCGATAAAGGCTAAATTGACTGAAAATGCTGTTACCGGTGGTAGCTCTAAAAGCCAGAATGCTACAACTGAGAAACCATTCTCTGAAAATGACCCTCAGAACCTACATGGAAGGAAAAGTAGAAAACATGGAAGGTGCACTTTATTAGTTCGCAACAAGGGATTGAATTCAGAATCTGATGACTTTGTTCCATATACGGGCAAACGAACAGTGCTTTCCTGGTTGGTTGACTCAGGGGTAGTACAGGTAAGTCAGAAGGTTCAGTACCGCAGGAGGAAGAAAGTAATGCTGGAGGGATGGATCACAAGAGAAGGCATTCACTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTCGAGCTTCATGCAGGAAGCAAATTGCCTCAGCCATATCAGAACATATATTTAGATTCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGGAAAAACAAGAGAATTCTGGGAAAATCAGTTTCCATTCAGTAGATGTTGATGGTAACGATCCAAATGATGATACCTGTGGTATATGTGGAGATGGAGGAGATTTAATCTGCTGTGATGGTTGTCCATCAACATTTCATCAGAGTTGCTTGGATATACAGATGCTCCCTCCTGGGGAATGGCGTTGTCCAAATTGCACATGTAAATTTTGTGGACTAGCCAGTGCAACTACTGACAAAGAAGATGATGCAACTGTAAATGCTCTACGTACTTGTGACTTGTGCGAGAAAAAATATCATGACCGCTGCACTAAGGATATGGGTGCCCTTCTTGCCAACTCCAATATGTCAGAGCATTCCTTTTGTGGAAAAAGCTGCAAAGAGCTTTTTGAGAACTTGAAGAAGTACCTTGGTACCAAGCATGAACTTGATGCAGGCTTTACATGGTGTCTTGTTCGCAGAACAAACGATGATTCGGAAGCAGCTAGTAGGGGAGTCACGCAGAGGGTTGAGTGTAACTCCAAGCTGGCTGTTGCACTGACTGTGATGGACGAATGCTTTTTACCTGTTGTTGATAGGAGGAGTGGGATCAATTTAATCCGTAATAGTTTATATAATAGCGGGTCAAACTTCAGTCGGTTGAATTATACTGGCTTTTATACCGCTATTTTGGAGCGGGGTGATGAAATAATTTCTGCAGCATCTATCAGGTTCCATGGGACTAAGTTAGCAGAGATGCCATTCATTGGAACTCGCCACATATATAGGAATCAGGGAATGTGCCGCCGGCTTTTTTCTGCCATTGAACTCGCTCTTTGCTCATTGAAGGTTGAGAAGCTGGTTATTCCTGCAATTTCTGAACTTGTTCATACGTGGACAACAGTTTTTGGCTTCACACATCTTGAGGAACCACTTAGGCAAGAAATGAGGTCATTGAATATGTTGGTGTTCCCTGGCATTGATATGTTACAGAAGCTTCTAGCAGAGCAAGGAAAACTTGAGGATCCTGAGCAATTTGAGAATGGAGACGTGGGTTCTATTAAGCCTGCTGTGGTCAATGGGTTAGATATCAATTCACCCGCTTTGCAAGATCCTCATGGAAGTGAGGATGCTAGTTCCAATCTCGCCAATAAGATTAACAATGAATGTAGTGATGCTTCTCAAGATATAAGCCATCAAGGTTTAACTGGCAGAACTGTGTGCTCAAAATCTCATTCTGAGGAAAGAATATCTGATTCTGTTTCAGAAAACTGTGCTTCTCCTTCTAATTCTAGTCATGGGGTACTCAAAAAGAAAATTAAAATATCGATGTCTTCTCCCATCAATGATCCATCACCCAAATGTCAACTCATTTCACCAAACGATACTTCTACAAATGGTCTTCCATTGGATCACTCAGATAGTCATGAAATCCCAGCTTTGGGTCAAGCAACTGCATGTTCTGACCTAGCTACTGTAAAGAACATGGTTGAACCTGCTTCTGAGGGGAAACCCCATGCTTTCACTGATATGAATTGTGATTCACCAGGTCTTGACCAAAATCCTGTATCGGATTCTCATGTGGTGGATAATGCTTTGTCTTTTAAAGAGTTTGATATGAATGATGCCCATGTTGAGGTTCTCGAAGCTGGTCCTATAGTGAATTCATCTCAGGCGAACAATACCGAAGAGAATAATGAAAATGCAGATGTCTCTGGTTCTGTTCTGAATCATGCTATCACTGATATGAATTGTGATTCACCAGGGCTTGACCAAAATCCTGTGTCGGATTCCCGAGTGGCGGATAATGATATGTCTTTAAAAAAGTTTGATATGAATGATGCCCATGTCGAGGTTGTTGAAGCTGGTCCTTTAGTGAATTCGTTCGAGGGGAACAATGCCAAAGAGAATGATGAAAATGTAGATGTATCTGGTTCTGTTCTTAATCATGCTATCACTGATATGAATCGTGATTCACCAGGGCTTGACCAAAATCCTCTGTCGGACTCTCAGGTGGTGGATAATGATTTGTCTTTAAAAAAGTTTGATATGAATGCTGCCCATGGTGAGGTTCTTGAAGCTGGTCCTTTAGTGAATTCATCTCAGGCGAACAATACCGAAGAGAATAATGAAAATGTAGATGTCTCTGGTTCAGCTCTTAATCAAGATATCACTGATATGAATTGTGATTCACCAGGGCTTGACCAAAATCCTGTGTCGGATTCTCGAGTGGCGGATAATGCTTTGTCTTGTAAAGAATTTGATATGAATGATACCCATGTCGAGGTTCTTGAAGCTGGTCCTTTAGTGAATTCGTCCAAGGGGAACAATGCCAAAGAGAGTGATGAAAATGTAGATGTCTCTGGTTCAGTTCTTGCTCACACTGAAAGTGATATGAATAATAATCCACCAGGGCATGACCGAAATCCTGTGCTGGATTCTAAAGTGACGGATAATGCTTTGCCTTTTAAAGAGTTTGATATGAATGATGTCCGTGATGAGGTTGTAGAAGCCGGTCCTTCAGTGAATTCATCGGAGGGGAACAATACCAAAGAGAATAATAAAAATGTAGATGTCTCTGGTTCAGCTCTTAATCATGCTTTAATTGATATGAACAGTAATTCACCAGGTCTTGACCAAAATCCTGTGGTGGATTCTCAAGTGGCGGAAAATGCATTGTCTTGTAAAGACTTTGATATGAATGATACCCATGTCGAGGTTCATGAAGCTGGTCCTTTAGTTAATTTGCCTGAGGGGAACAATGCCAAAGAGAATGATGAAAATGTAGATGTCTCTGGTTCTGTTCTTAATCATGCTGGTGAGAGTTCCTTGCAGGTAAGATCTGATTTAAATGGTGAACTTGCATATGAAGGGGAAAAGAATTCACATTTGGACACAGAACTTGCTTCAAATGAAATGTGTTTTGATGAAACTGGCGTAAATCCTTCTGGTGATAGTGCTGAGACTGACCAAGCATTGAATGGTTGA 5019 0.4218 MEPGTRIGSPSGVVVKNRSSSGCLIVRKKGDGLGGGVGVGGSSSRKQFDSKKIRKKVKVEVDSSDSESSGELVMPSGRRLGPETIRVCNSLSALERGGGNVGGGEISRKRERMEQIRRNGDGMVEGNGLERREKKVKLDVFDFDEYDGVGKERMRRQFDNDRVGLGGGRFMGTMHPARGSVDREIETGSSRHIVDKRKKAYYDRAIGLHPGDGSEHSRIKMKRDGTQPPLSTLKEKFKPDESIRVQGKNGVLKVMVNKKKVGASVERYEQRKPVESKQSLRAEGTSKRSVPIHPSSHLETKSAEKQGLLVRPEKKQTTTRKSLSSKEDSKGKEQDSDDNDTSMNLEVKNIKAHTPSKKITSENEQTPVHDKLPTTKSSEGKIRRGSGTEKQKLREQIREMLLNKGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLIEDERAAKGESSSFAPIADDVLSQLTRKTRKKMEKDLKMKKKKQRIDDMDSGKERQIKRTSGKKHHMNSIDSDSNEDKLSSFIKQQGSKSIKAKLTENAVTGGSSKSQNATTEKPFSENDPQNLHGRKSRKHGRCTLLVRNKGLNSESDDFVPYTGKRTVLSWLVDSGVVQVSQKVQYRRRKKVMLEGWITREGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLDSGVSLLQCQIDAWEKQENSGKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWRCPNCTCKFCGLASATTDKEDDATVNALRTCDLCEKKYHDRCTKDMGALLANSNMSEHSFCGKSCKELFENLKKYLGTKHELDAGFTWCLVRRTNDDSEAASRGVTQRVECNSKLAVALTVMDECFLPVVDRRSGINLIRNSLYNSGSNFSRLNYTGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRNQGMCRRLFSAIELALCSLKVEKLVIPAISELVHTWTTVFGFTHLEEPLRQEMRSLNMLVFPGIDMLQKLLAEQGKLEDPEQFENGDVGSIKPAVVNGLDINSPALQDPHGSEDASSNLANKINNECSDASQDISHQGLTGRTVCSKSHSEERISDSVSENCASPSNSSHGVLKKKIKISMSSPINDPSPKCQLISPNDTSTNGLPLDHSDSHEIPALGQATACSDLATVKNMVEPASEGKPHAFTDMNCDSPGLDQNPVSDSHVVDNALSFKEFDMNDAHVEVLEAGPIVNSSQANNTEENNENADVSGSVLNHAITDMNCDSPGLDQNPVSDSRVADNDMSLKKFDMNDAHVEVVEAGPLVNSFEGNNAKENDENVDVSGSVLNHAITDMNRDSPGLDQNPLSDSQVVDNDLSLKKFDMNAAHGEVLEAGPLVNSSQANNTEENNENVDVSGSALNQDITDMNCDSPGLDQNPVSDSRVADNALSCKEFDMNDTHVEVLEAGPLVNSSKGNNAKESDENVDVSGSVLAHTESDMNNNPPGHDRNPVLDSKVTDNALPFKEFDMNDVRDEVVEAGPSVNSSEGNNTKENNKNVDVSGSALNHALIDMNSNSPGLDQNPVVDSQVAENALSCKDFDMNDTHVEVHEAGPLVNLPEGNNAKENDENVDVSGSVLNHAGESSLQVRSDLNGELAYEGEKNSHLDTELASNEMCFDETGVNPSGDSAETDQALNG 1672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04395 1672 MobiDBLite consensus disorder prediction 205 223 - -
Mepo4g04395 1672 MobiDBLite consensus disorder prediction 485 502 - -
Mepo4g04395 1672 MobiDBLite consensus disorder prediction 359 373 - -
Mepo4g04395 1672 ProSitePatterns Zinc finger PHD-type signature. 711 750 IPR019786 -
Mepo4g04395 1672 ProSiteProfiles Zinc finger PHD-type profile. 708 753 IPR019787 -
Mepo4g04395 1672 MobiDBLite consensus disorder prediction 1649 1672 - -
Mepo4g04395 1672 MobiDBLite consensus disorder prediction 374 392 - -
Mepo4g04395 1672 MobiDBLite consensus disorder prediction 519 564 - -
Mepo4g04395 1672 SMART PHD_3 752 811 IPR001965 -
Mepo4g04395 1672 SMART PHD_3 710 751 IPR001965 -
Mepo4g04395 1672 PANTHER PHD FINGER PROTEIN 12 381 1148 IPR042163 GO:0003714|GO:0045892
Mepo4g04395 1672 MobiDBLite consensus disorder prediction 105 128 - -
Mepo4g04395 1672 SUPERFAMILY FYVE/PHD zinc finger 700 756 IPR011011 -
Mepo4g04395 1672 MobiDBLite consensus disorder prediction 205 239 - -
Mepo4g04395 1672 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 803 IPR013083 -
Mepo4g04395 1672 MobiDBLite consensus disorder prediction 474 577 - -
Mepo4g04395 1672 MobiDBLite consensus disorder prediction 26 128 - -
Mepo4g04395 1672 MobiDBLite consensus disorder prediction 298 344 - -
Mepo4g04395 1672 Pfam PHD-finger 711 753 IPR019787 -
Mepo4g04395 1672 CDD PHD2_CHD_II 711 750 - -
Mepo4g04395 1672 MobiDBLite consensus disorder prediction 258 392 - -
Mepo4g04395 1672 MobiDBLite consensus disorder prediction 260 282 - -
Mepo4g04395 1672 Pfam Tify domain binding domain 633 683 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04395 Mepo-Chr4 53749734 53758619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04395 4 1049 PHD Transcription Factor Family AT4G14920 48.471 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo4g04395 TDBD 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04395 - - mtr:25485216 3105.46