Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04344 ATGAATCCTCATCATGGTGGAATGAAGGAGGAGTTTGTAGGAGGAAGTTCTTCTTTTTGTGTGGTTGGTGAACCTCAACCAAGGGAAGGACTACATGAAAATGGTCCTCCACCATTCCTCACAAAAACATATGATATAGTTGATGATCCTTCCACAAATCATATAGTTTCATGGAGTACAGGGAACAATAGCTTTGTTGTTTGGGATCCTCAAGCCTTTTCTATTATTCTTCTCCCTAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTTAATACCTATGGGTTTAAAAAGGTTGATGCAGATAGGTGGGAATTTGCTAATGTGATGTTTCTAAGAGGACAAAAAATCCTTTTGAAGAACATTAGAAGAAGAAAAGCAAATCAATCTCAAGTAATGCAAGCACTAGACCCGTCGTGTGTTGAGCTGGGAAGGTTTGGATTAGACGGAATCGAAGTGGATCGGTTGAGGCGCGACAGACAAGTTCTAATGGTTGAGTTGGTGAAACTTAGGCAACAACAACAAAATACTAGAACTCACCTTGAAGCAATGGAAGGAAGGCTTAAAAGAAGTGAAAAGAAACAAAAACAGATGATGAATTTCATGGCAAGGGCAATACAAAATCCTAATTTCTTGCAACAGTTAGTTCAGCAGAAGGAATGGAGAAAAGAGTTAGAGGAAATTTTTTCTAAGAAGAGAAGGAGAACTATTGGTCAAGGGCCTAGTAATGTTGATGCAGGTGATGAATTAGGATATGTTGATAAAGAGTGCTTAAATTTTGTCAAACTTGAACCACATCAAGGTATTGAGGAAGACTCCAATCAAATCAATCAACTTGAAGTAAAAGATAAAGAGATCGATATTGAAGTGTTTTGGCAAGATTTGTTTAAAGAGGGTATTGAAGATGAAGTAGATATTGAAGATGTTGATGTATTGGCTGAGCAACTTGGTTATCTTGCCTCTAGTCCTCCTAAATAG 987 0.3779 MNPHHGGMKEEFVGGSSSFCVVGEPQPREGLHENGPPPFLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSIILLPRFFKHNNFSSFVRQLNTYGFKKVDADRWEFANVMFLRGQKILLKNIRRRKANQSQVMQALDPSCVELGRFGLDGIEVDRLRRDRQVLMVELVKLRQQQQNTRTHLEAMEGRLKRSEKKQKQMMNFMARAIQNPNFLQQLVQQKEWRKELEEIFSKKRRRTIGQGPSNVDAGDELGYVDKECLNFVKLEPHQGIEEDSNQINQLEVKDKEIDIEVFWQDLFKEGIEDEVDIEDVDVLAEQLGYLASSPPK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04344 328 Pfam HSF-type DNA-binding 39 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo4g04344 328 PRINTS Heat shock factor (HSF) domain signature 39 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo4g04344 328 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo4g04344 328 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo4g04344 328 ProSitePatterns HSF-type DNA-binding domain signature. 78 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo4g04344 328 Gene3D - 31 129 IPR036388 -
Mepo4g04344 328 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 245 IPR027725 -
Mepo4g04344 328 SMART hsfneu3 35 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo4g04344 328 FunFam Heat shock transcription factor 1 32 129 - -
Mepo4g04344 328 Coils Coil 156 176 - -
Mepo4g04344 328 SUPERFAMILY "Winged helix" DNA-binding domain 34 128 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04344 Mepo-Chr4 53204521 53206359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04344 20 325 HSF AT3G22830 54.848 2.54e-122 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mepo4g04344 HSF_DNA-bind 1.8e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04344 K09419 - gmx:100809515 441.039