Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04318 ATGACGACGACCAATGGAGACGATAATGAGAATAGTTTAGAGTTGGATAAAGAAAAGAAGAATAAGAAGAAAAAAGCAAAGTCTGAAGAAGAATTTGTAGTAATGGAAAACAAGGTGGAGGATCCCAATGGGATTTCTAAATTTAAGATATCTGAGCCGTTGAGAGAAAAGTTGAAGGAAAAGGGAATTGAGTCATTGTTTCCTATTCAGGCTGTGACTTTTGATATCATTCTTCAAGGTTGTGATTTGGTTGGTAGAGCTCGCACTGGTCAGGGTAAAACTCTTGCCTTTGTATTGCCCATATTAGAATCTGTAACAAATGGCAAAGCAAAAGAAACAAACGCCAAAGCAAAAGAAACGAATGGCAATGCAAAAGAATCAAGGAAGGGGGGCTATGGAGGGCCTCCGAAACCAAGTGTTCTTGTGCTTTTACCTACGAGGGAGTTGGCCTGTCAGGTGAATGCTGATTTTGAAGTTTATGGTGGGGCAATGGGATTGACTTCTTGTTGTTTATATGGAGGAGCTCCATATAAAGCTCAAGAAATCAAGCTTGAAAGAGGTGTCGATATTGTTATTGGCACACCGGGCCGCATAAAGGATCATATAGTGCGAGGAAGTATTGACCTGAGCACACTAAAGTTTCGTGTCCTCGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAATTGATTCTAGGTAAGGTAAAAAATGTTGATCAAGTTCAGACACTTCTATTCAGTGCTACTTTGCCAGAATGGGTTAAGAATATCGCTAAAAGATTTCTTAAAGAAGATAAGCAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTACCAGTGTTAGGCATTATATTCTTCCTTGTACTGGTTCTGCTAGGTCCCAGCTTATCCTAGACATCATTCGATGTTACAGCAGCGAAGGTCGAACGATTATATTCACTGAGACAAAGGAATCAGCATCTCAGCTTGCAGAGTTGTTGCCTGGAGCAAGAGCTCTCCATGGCGACATTCAGCAAGCACAACGCGAGGTTACTTTGTCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCCACAAACGTGGCAGCGCGGGGTCTGGATATTAATGATGTTCAGCTAATTATTCAGTGTGAACCTCCAAGGGATGTAGAAGCCTATATCCATCGTTCTGGGCGCACAGGAAGAGCAGGTAATACTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAATATACCTAAAATAGAGAGAGAGTCAGGTGTTAAATTTGAACACATATCTGCCCCTCAGGCCAATGATATTGCCAAAGCTGTTGGCAGAGAAGCTGCAGAAATGATTATGCAGGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCTGAGGAGCTTTTGAATAACTCCGGTTTATCAGTTGTTGATTTATTTGCAAAGGCTCTTGCCAAGGCTGTAGGTTATACTGAGATCAAGAAAAGATCTCTTCTCTCTTCTATGGAGAACTATGTTACATTACTTCTCGAGAACGGAAAACCTATCTTTACCCCAACTTTTGCATATAAAATCTTGAGGAGGTTTTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTACTATCACTGCAGATGGAAATGGTGTTGTTTTTGATGTAGCAGCCGAAGATTTAGATACATATCTTGCTGGTAAGGGAAATGCCTCAGATGTAAGATTAGAGGTGTTGAAAGAATTGCCGCGTCTGCAACAGAGAGATCAATCAAGAGGGGGTAGATTTGGCGATAGTAGTGGCCGTGGTGGCGGTAGTAGGTTTTCCGGTGGTGGCAGGAATGGTAGATTTTCAAGTGATAGGTTTTCCAACGGTGGTGGTAGAGGTCGTGGCGGCAACTGGGGTGGGAACAAATGGTGA 1926 0.4237 MTTTNGDDNENSLELDKEKKNKKKKAKSEEEFVVMENKVEDPNGISKFKISEPLREKLKEKGIESLFPIQAVTFDIILQGCDLVGRARTGQGKTLAFVLPILESVTNGKAKETNAKAKETNGNAKESRKGGYGGPPKPSVLVLLPTRELACQVNADFEVYGGAMGLTSCCLYGGAPYKAQEIKLERGVDIVIGTPGRIKDHIVRGSIDLSTLKFRVLDEADEMLRMGFVEDVELILGKVKNVDQVQTLLFSATLPEWVKNIAKRFLKEDKQTADLVGNTKMKASTSVRHYILPCTGSARSQLILDIIRCYSSEGRTIIFTETKESASQLAELLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNIPKIERESGVKFEHISAPQANDIAKAVGREAAEMIMQVSDSVIPAFKSAAEELLNNSGLSVVDLFAKALAKAVGYTEIKKRSLLSSMENYVTLLLENGKPIFTPTFAYKILRRFLPEEKVEAVKGLTITADGNGVVFDVAAEDLDTYLAGKGNASDVRLEVLKELPRLQQRDQSRGGRFGDSSGRGGGSRFSGGGRNGRFSSDRFSNGGGRGRGGNWGGNKW 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04318 641 MobiDBLite consensus disorder prediction 110 134 - -
Mepo4g04318 641 CDD DEADc 54 268 - -
Mepo4g04318 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 416 IPR027417 -
Mepo4g04318 641 Pfam DEAD/DEAH box helicase 67 260 IPR011545 GO:0003676|GO:0005524
Mepo4g04318 641 SMART helicmild6 327 404 IPR001650 -
Mepo4g04318 641 MobiDBLite consensus disorder prediction 1 29 - -
Mepo4g04318 641 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 302 461 IPR001650 -
Mepo4g04318 641 MobiDBLite consensus disorder prediction 10 29 - -
Mepo4g04318 641 CDD GUCT_RH7_like 500 585 - -
Mepo4g04318 641 SUPERFAMILY RNA-binding domain, RBD 497 580 IPR035979 GO:0003676
Mepo4g04318 641 Gene3D - 286 511 IPR027417 -
Mepo4g04318 641 SMART ultradead3 62 290 IPR014001 -
Mepo4g04318 641 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 74 272 IPR014001 -
Mepo4g04318 641 MobiDBLite consensus disorder prediction 589 641 - -
Mepo4g04318 641 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 216 224 IPR000629 -
Mepo4g04318 641 CDD SF2_C_DEAD 287 413 - -
Mepo4g04318 641 Gene3D - 1 272 IPR027417 -
Mepo4g04318 641 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 14 470 - -
Mepo4g04318 641 FunFam DEAD-box ATP-dependent RNA helicase 7 510 582 - -
Mepo4g04318 641 Pfam Helicase conserved C-terminal domain 303 404 IPR001650 -
Mepo4g04318 641 Gene3D - 512 583 - -
Mepo4g04318 641 Pfam GUCT (NUC152) domain 493 588 IPR012562 GO:0003723|GO:0004386|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04318 Mepo-Chr4 52961050 52965518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04318 39 461 Eukaryotic Initiation Factors Gene Family AT3G19760 28.337 6.77e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04318 K16911 - gmx:100820207 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04318 4 52961050 52965518 Mepo4g04318 4 52961050 52965518 ECH