Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04302 ATGTGTCGTTTTCTGCAGTTGAGGTCAGAGAGAGAGAGAAAGAGAGAAAGCAAAATGGGAAGAGGGAAGGTGGTTATGGAGAGAATACATAATAAGATCAATAGACAAGTAACATTTTCAAAGAGAAGAAGTGGTCTGTTGAAGAAAGCCTTCGAACTTTCTGTCTTATGTGATGCCGAAGTTGCTGTTATCATCTTCTCCAGTCTTGGCAAGCTTTTTCAATACAGTACCACTGACTTGAACAAAATCATTGAGAAGTATCGTCAATGTTGCTTCAACAATATGTCTGAGAATGGTGACTTAGGAGAACATGAGTCACAGGTTTTCTCTTCTTTTTCTCATGGCTTATTCCAGGAGCTTTTGATGCTAAGAGTCAAGCATGAATCTCTTGCACGGACACAAAGGAATTTTTTGGGGGAAGAAATCAATGCACTTAGCATAAAAGATTTGCAAAGTCTAGAGAAACAACTGGAGAGAACGCTTGCTCAAGCTCGAAAGCACCAAATGCAAAAGTTGATGGAAAGAGTTGATGAATTGCGTGAGGAGGTGCACAAGGTGGAAGAGGTCAACAAACAATTAGAATCCAGGGATAGAGATATAGACACCATGATTTGTGACAATTCTACGGATTCCACCGTCTCGAGTAACAACAATATCATTACCAATTTGCTTGATGCACAAGCCAATCCGTTTGAACATGTGACAACAGGACAGTTTCTGCACCTACAAGATGCTTCAACAAGACAGGCAACAGATACAAGGACCGACAGAGGACAAAGCAGTCGCAACAAGAACATTGGATGGATGAATATTTGA 816 0.4056 MCRFLQLRSERERKRESKMGRGKVVMERIHNKINRQVTFSKRRSGLLKKAFELSVLCDAEVAVIIFSSLGKLFQYSTTDLNKIIEKYRQCCFNNMSENGDLGEHESQVFSSFSHGLFQELLMLRVKHESLARTQRNFLGEEINALSIKDLQSLEKQLERTLAQARKHQMQKLMERVDELREEVHKVEEVNKQLESRDRDIDTMICDNSTDSTVSSNNNIITNLLDAQANPFEHVTTGQFLHLQDASTRQATDTRTDRGQSSRNKNIGWMNI 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04302 271 ProSiteProfiles K-box domain profile. 113 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo4g04302 271 CDD MADS_MEF2_like 20 90 IPR033896 GO:0000977|GO:0045944
Mepo4g04302 271 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677|GO:0046983
Mepo4g04302 271 FunFam MADS-box transcription factor MADS-MC 31 101 - -
Mepo4g04302 271 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 203 - -
Mepo4g04302 271 MobiDBLite consensus disorder prediction 245 271 - -
Mepo4g04302 271 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677|GO:0046983
Mepo4g04302 271 Coils Coil 147 196 - -
Mepo4g04302 271 SUPERFAMILY SRF-like 20 95 IPR036879 GO:0003677|GO:0046983
Mepo4g04302 271 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Mepo4g04302 271 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Mepo4g04302 271 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Mepo4g04302 271 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Mepo4g04302 271 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
Mepo4g04302 271 Gene3D - 31 108 IPR036879 GO:0003677|GO:0046983
Mepo4g04302 271 Pfam K-box region 116 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04302 Mepo-Chr4 52782864 52787903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04302 19 243 MADS-box Gene Family AT2G45650 42.437 1.49e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo4g04302 K-box 3.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04302 K09264 - gmx:100778860 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04302 4 52782864 52787903 Mepo4g04302 4 52782864 52787903 ECH
Mepo4g04302 4 52782864 52787903 Mepo7g01143 7 17924497 17931033 PCT