Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04283 ATGAAAGCTATTTTCTGTGGAAATTTTGAATATGATTGCCGGGAGTCTGAGCTGGAGCGGCTTTTTAGAAGATATGGGAAGGTTGATAGGGTGGATATGAAGGCTGGATTTGCATTTATCTATATGGAAGATGAGAGAGATGCTGAGGCTGCAATCCGTGCTCTTGATCGGATAGAATTTGGTCGAAAGGGGCGCAGACTTCGTGTTGAATGGACAAAGCAAGAACGTGGTGTCAGAAGGCCTGCTGAGCGTCCAAAAAGATCTTCAGCTAATGCGAGACCATCAAAGACCTTATTTGTAATTAATTTTGATACATACCAGACCAGAACAAGGGACTTGGAGAGGCACTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGAAAGAATTTTGCATTTGTTCAGTATGAATCAGAAGATGATGCTTGCAAAGCACTGGAAGCTACAAATAACAGCAAGTTGATGGATCGGGTTATTTCAGTTGAATTTGCTGCTAGAGATGATGATAGGCGAAATGGACATAGTCCAGATAGAGGCCGTGATCGTCAACGTGACAGAAGCCGTGATGGAAGGCGATCACCCAGTCCCTATCGTCGAGAAAGGGGTAGTCCTGATTATGGTCGTGGGCCTAGTCCATATAAGAGGGAGAGGAGCAGCCCTGACTATGGGCGTGGCAATAGCCGTAGTAGAAGCCCCCATCAAAGAGAGCGAGGTAGTCCTGCTTATGGGCGTAGAAACCTTAGTCCTTACAGAAGGGAGAGGGATGGTGCTGAGGCTGTTCGCGACCCCAGCCGCAGTCCTTATCACAAAGAGCGGCGGAGAACTGACCGATCTCGGTCCCATAGTCTTGAAGAAGGAGAGAGGATAGAACCTCAAAAAGGTCATGGATCTGACCCTAGTCCTTATGGTACTGTGAAGGATAGCCCTGAAAATGGCCATGACCGGAGGCGTAGTCCTGATGCAAAAAGAAACCCCAGCCCATTCAATGGTTCTAGAGGGAGCCCTAGTCCTGATGCAAAAGGGAACCCCAGCCCATACAATGATTATGGAGGGAGCCCAAATACTATGCCTGAACCCAGGGACAGTCCCAACTATGGTGGTCCTGAAAGTCCCATGAATGAACAATATCGCAGGTTTGCAGACATTTTATTTATTTGTTGGAGTTTTTGTTTATTCTCTCCAGCCTTCTTTACGTTTGATATAGTCTCTATTTTAATTGTGCATATTTGTGATGTTGCAGTCAGAGCCAGTCACCCCCTGCAGAAGAATGATTTCAGTCGATGA 1287 0.4639 MKAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDAEAAIRALDRIEFGRKGRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFEPYGKIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAARDDDRRNGHSPDRGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERSSPDYGRGNSRSRSPHQRERGSPAYGRRNLSPYRRERDGAEAVRDPSRSPYHKERRRTDRSRSHSLEEGERIEPQKGHGSDPSPYGTVKDSPENGHDRRRSPDAKRNPSPFNGSRGSPSPDAKGNPSPYNDYGGSPNTMPEPRDSPNYGGPESPMNEQYRRFADILFICWSFCLFSPAFFTFDIVSILIVHICDVAVRASHPLQKNDFSR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04283 428 MobiDBLite consensus disorder prediction 248 295 - -
Mepo4g04283 428 MobiDBLite consensus disorder prediction 167 371 - -
Mepo4g04283 428 SMART rrm1_1 3 70 IPR000504 GO:0003723
Mepo4g04283 428 SMART rrm1_1 97 163 IPR000504 GO:0003723
Mepo4g04283 428 MobiDBLite consensus disorder prediction 325 352 - -
Mepo4g04283 428 SUPERFAMILY RNA-binding domain, RBD 3 169 IPR035979 GO:0003676
Mepo4g04283 428 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 97 324 - -
Mepo4g04283 428 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Mepo4g04283 428 MobiDBLite consensus disorder prediction 167 241 - -
Mepo4g04283 428 MobiDBLite consensus disorder prediction 309 323 - -
Mepo4g04283 428 CDD RRM1_AtRSp31_like 2 73 - -
Mepo4g04283 428 FunFam Serine/arginine-rich splicing factor RS31 88 177 - -
Mepo4g04283 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Mepo4g04283 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Mepo4g04283 428 Gene3D - 85 182 IPR012677 -
Mepo4g04283 428 Gene3D - 1 84 IPR012677 -
Mepo4g04283 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Mepo4g04283 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04283 Mepo-Chr4 52604424 52609309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04283 4 172 Eukaryotic Initiation Factors Gene Family AT1G49760 23.560 3.40e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04283 K12893 - gmx:100796509 550.051