Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04270 ATGGGTGCGGTTTCGAAATCTGCTTCTGCTGATTGTTTCAGTGAGGTGATCTCGTCGAAGCCAGGTTTTCGGTTCAATCCTACGGATGAGGAGTTGGTGATGTATTATCTGAAAAGGAAGATTTGTGGAAAGAAGTTGAAGTTCAACGTTATTTGTGAAACTGATGTGTTCAAGTGGGATCCCGAGGATTTGCCTGTTGATCTTGCTCTTCACTCTTACTTGAGTACCCTTTATGTTTTTCTGATTTTTTAA 252 0.4087 MGAVSKSASADCFSEVISSKPGFRFNPTDEELVMYYLKRKICGKKLKFNVICETDVFKWDPEDLPVDLALHSYLSTLYVFLIF 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04270 83 SUPERFAMILY NAC domain 16 68 IPR036093 GO:0003677|GO:0006355
Mepo4g04270 83 Pfam No apical meristem (NAM) protein 21 68 IPR003441 GO:0003677|GO:0006355
Mepo4g04270 83 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 20 72 - -
Mepo4g04270 83 Gene3D NAC domain 28 81 IPR036093 GO:0003677|GO:0006355
Mepo4g04270 83 ProSiteProfiles NAC domain profile. 19 83 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04270 Mepo-Chr4 52474710 52474961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04270 4 65 NAC Transcription Factor Family AT1G34190 61.290 2.92e-21 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo4g04270 NAM 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04270 - - mtr:25485018 126.331