Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04263 ATGTTTATTCTCTCCTTTGAAAGCACAATTGAGTCAAAAATGAGTCTCATTTTCATCTTCCTCCTTCTTCTTTGTAACCATCACTATAGTGCAAAAGCACAACCTCCAGTACAACCAGTGTCTCCTTTTGCTCCACAAACAGCTTTATGGGACGTATCTTCCATTGGTGTTATCATAGGAACCATCATTGCAACACTTATCTTACTGTTTCTCTTCTTAACGTTAATACGCAGCTTCACAAACTCATTAAGGGCAGACTCATCAAAATGTGAAAATGACAAAGGTATCAACCCTCAACTTCTCAAAACTTTCCCAATCGTACTTTACTCTACCATCATCAAACATTTTAATGAAAGTGTTGAAGATCCTCTCCAATGTGCTGTGTGTCTCGGTGATTTCAACAACAATGACAAAGTTCGTGTGCTACCTCAATGTAACCATGTTTTTCATCCTCCATGTATTGATGCTTGGCTTTCTTCACATGTTACTTGTCCCGTTTGTCGTACAAACCTCAATCATCAATGTTCCTGTCATTTTTCCGTTTCCATTGACACACAAAACAACGGCGAATGTGGAAGTCAAAGGATACAATAA 594 0.3838 MFILSFESTIESKMSLIFIFLLLLCNHHYSAKAQPPVQPVSPFAPQTALWDVSSIGVIIGTIIATLILLFLFLTLIRSFTNSLRADSSKCENDKGINPQLLKTFPIVLYSTIIKHFNESVEDPLQCAVCLGDFNNNDKVRVLPQCNHVFHPPCIDAWLSSHVTCPVCRTNLNHQCSCHFSVSIDTQNNGECGSQRIQ 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04263 197 SUPERFAMILY RING/U-box 116 174 - -
Mepo4g04263 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 174 IPR013083 -
Mepo4g04263 197 CDD RING-H2_EL5-like 125 168 - -
Mepo4g04263 197 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Mepo4g04263 197 Pfam Ring finger domain 125 168 IPR001841 -
Mepo4g04263 197 FunFam E3 ubiquitin-protein ligase ATL6 84 174 - -
Mepo4g04263 197 SMART ring_2 126 167 IPR001841 -
Mepo4g04263 197 PANTHER RING FINGER DOMAIN-CONTAINING 35 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04263 Mepo-Chr4 52421571 52422476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04263 16 181 Rapid Response to Elicitors AT3G05200 34.091 2.98e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04263 K10664 - gmx:100809056 122.094