Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04253 ATGGGTAAAGCACCTTGTTGTGAGAAACATGGTGTGAAAAGAGGAGCTTGGACTCCTGAAGAAGATGAAGCTTTAGTTGATTACATCAACAAACATGGCCATGGAAGTTGGCGTACACTTCCTAAACATGCAGTAGGTCTCCTAAGATGTGGCAAAAGTTGCCGGCTTCGGTGGATAAACTATCTTCGTCCCGGCATCAAGCGTGGCTCATTTACTAATGAAGAAGAAACTACTATTATACAATTTCATGCCATGCTAGGCAACAGGTGGGCTGCTATAGCAGCTCAACTACCAGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATTTAAAGAAACGTGTCCGTCAATCACTAGGGCAAAAACATCCATGTCTCCTTTCTGATAGGAATGTCCAGTCTAATTCTCCTTCTACACGCCACATGGCCCAGTGGGAAAGTGCAAGGGTTGAAGCAGAGACGAGGCTGTCGTTGGAGTCCACTTTGCTTAATTCAGGCTCTACGACTAAAACATATCCTGATTACTTTCTTCAACTTTGGCATTCTGATGTTGGAGAGAAATTCCGTGCAGGAGTAGTGTGTCAAAGCATTGTCTCGCAAGCATCATCATCATCGCTATCCTCATCGAAATTGGAGGAGTCGTGTTCAGATGTCTCATTGCAGGTGAAAAACAACGGAACACAAAGCCTGAAAGTGTCACCAAAGCTTGAAGATGTCAACGTGATTGAGGAACAAAAAGCCAGTAGCTACAAACTGAAGCTTGAAGATGATAGATCTGGTTCAGATTCAGGAAACTATGAATTTCTTGATGCTTCTGATTCTGCACTGAAGCACCTACTGCGAATGCCTGATGAAATAGGATTCCTGGGACATACCGACAATTTCTTGAATCTCCTTGATGGTAGATGTGACTAA 921 0.4332 MGKAPCCEKHGVKRGAWTPEEDEALVDYINKHGHGSWRTLPKHAVGLLRCGKSCRLRWINYLRPGIKRGSFTNEEETTIIQFHAMLGNRWAAIAAQLPGRTDNEIKNYWNTHLKKRVRQSLGQKHPCLLSDRNVQSNSPSTRHMAQWESARVEAETRLSLESTLLNSGSTTKTYPDYFLQLWHSDVGEKFRAGVVCQSIVSQASSSSLSSSKLEESCSDVSLQVKNNGTQSLKVSPKLEDVNVIEEQKASSYKLKLEDDRSGSDSGNYEFLDASDSALKHLLRMPDEIGFLGHTDNFLNLLDGRCD 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04253 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 247 - -
Mepo4g04253 306 SMART sant 67 115 IPR001005 -
Mepo4g04253 306 SMART sant 13 64 IPR001005 -
Mepo4g04253 306 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mepo4g04253 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Mepo4g04253 306 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Mepo4g04253 306 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mepo4g04253 306 Gene3D - 69 144 - -
Mepo4g04253 306 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Mepo4g04253 306 CDD SANT 16 62 IPR001005 -
Mepo4g04253 306 FunFam Myb transcription factor 11 68 - -
Mepo4g04253 306 FunFam MYB transcription factor 70 117 - -
Mepo4g04253 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mepo4g04253 306 CDD SANT 70 113 IPR001005 -
Mepo4g04253 306 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mepo4g04253 306 Gene3D - 14 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04253 Mepo-Chr4 52344394 52346652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04253 1 291 MYB Transcription Factor Family AT3G61250 51.634 2.99e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo4g04253 Myb_DNA-binding 3.7e-15 CL0123