Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04230 ATGTCAGAACCTGAGGAAGATAATCAAGACTTTCCTCCCAAGACAAAAACATCATTAGAAGAACATGGTTGTTCTATGGATTTTGATCTAGATTTAGAAACATCATGGCCTTTGGATCACATGTCCTTTCTCTCTAATAATCCCATGTCACCTTTTTTGTTTTCAAACATCTCTGATCAACCTTCTTCTCCTCTATGGACTTTTACTGATGGAGAAGATGCCAAACTTGCAGCTTCAGCTTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATAACTGAGAAGCTGGTGGAGAAAGACGACAACAAAACACTTTTGCCACCCCTTTTGCCACCAATAGAAAATTTGGATGGATATTGTGTAATCAAGGAAAAGATGACACAAGCGCTTCGGTACTTCAAAGAGTGGACTGAACTGAATGTTCTGGCTCAGGTTTGGGCACCTGTGAGGAATGGTAATCGGTATGTACTTACAACTTCAGGTCAACCCTTTGTCCTTGATCCACATAGTAATGGACTCAATCAGTATAGAACGGTCTCCCTGATGTACATGTTTTCTGTGGATGGAGAGAACGATGGAACTCTAGGACTTCCTGGTCGAGTTTTTCAGCAGAAACTACCAGAATGGTCTCCCAATGTTCTGTACTATTCTAATAAAGAGTATCCCCGCCGAGATCATGCTCAACATTACAACGTTCGTGGAACCTTGGCTTTGCCTGTATTTGAACCTTCGTTGCAGTCGTGTATCGGTGTGATAGAGTTGATCATGACTTCACTAAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCCCTAGAGGCAGTAAATTTGAGGAGCTCAGAGTTTTTGGACCATCCATTCACTCAGATTTGCAATGAAGGGCGTCAAAATGCATTATCGGAGATCTTAGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTAGCCCAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGCGGTTTCAAGAAAAGTTGTTCAAGTTTTGATGGTAGCTGCATGGGGCAAGTATGCATGTCTACAACTGAGGCAGCAGCCTATATTGTAGATGCTCATTTATGGGGTTTCAGAGAGGCATGTGTGGAGCATCACTTGCAACAAGGTCAAGGTGTTGCAGGTAGGGCGTTTTTGTCTCAAAACATGAGCTTCTGCACAAACATTACCCAGTTCTGCAAGACAGATTACCCTTTGGTTCATTATGCTCTCATGTTTGGGTTAACAAGCTGTTTTGCAATCTGTTTGCGGAGTTTCCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTGGGATCACAGAATTTAATGAACAGAAGATGCTGTTGGGATCCATATTGTCAACAATGAAACAGCATTTTCAGAGTCTTAACATTGCTGCTGGTGTTGAACTCGAGGAAAATGGTTCAATTGAAATTATTGAAGCAACTGATGAAGGCATTCGTCTTAGAACTGAATCTATTCCTATTGCTCAATCTATTAAATCACCACCTAGACCCGATGCCTCACCAAATATGGAGGAGGAAGAAGGGGTACCACAGGATCCATCAGAGGTCCATGTTGAAAATGTAGGTGGAAGTGTTGATCCGATGTCCACCTTAGGGAATAAAAACATCAAGAAACCCTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAGCGTTATTTCGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGCGTTTGCCCTACTACAATGAAGCGCATCTGCAGGCAGCATGGGATTTCTCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTATCCAAGCTCAAACGTGTTATTGAATCTGTCCAAGGCGCTGAAGGAGCGTTTGATTTGAATTCTCTCAGTAATAATCAACTTCCAGTTGCTAGTTCTTTTCCTGAGCCTTCTACTCCGAATAAGTCCAGCCAGCAAGGCTCATTAAGCATTAGGCCATCAGAGCCTCAGATGAAAGAGAATGAATTTGATGCCTCTAATGTATCAGAAACAAACAAACAGATTGTAATGGAAAATCAATTGCTAGGAGGAAGGAAACATAGTCTTGAGAAAGAAGTGATTAATGGTGAAGGCGTGACTATTCAGGAAATTGGCAAGGACCGGAAAAGGAATAGAACTAGGAGTGGCTCGAGCGAAGATAGCACAAACCCTACTTCTCATGGTTCATGCCACGGTAGTCCCCCAATTGAAATTCCAACCATAAAAGATCTGTTCAGTCCATCCAACAATGAACAACATGTGTTGAGGGGATCGCCAGAGTCGGGAATGCAGCCGACTAATGCTTTAAACTCTCCAACTGCTCACCGTATGCCCGACAATGTGATAGCAGAACTTCAAGAGCCGTTTGGAGGATTGCTAATAGAGGACGCTGGAAGTTCGAAAGACTTGAGAAATTTGTGTCCTTCAGTAGCTGAGGCCATTTTGGAGGATCTGGCTCCAGAAGCTTGTGGGAATAATTTTCCCGGTCCATCATATCTGGCTCCTCCTAAACAATGCAGAGATACTATTAATAATTCAGCAACGCCTTTTGCAGCTAGAAAAGAAATGAAGACTGTAACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTTAGGGTCTCTTTGAACTGTGGCATTGTGGAATTAAAAGAAGAAGTTTCCAAAAGATTGAAACTTGAGGTTGGCACATTTGATATCAAGTACATGGATGATGATAATGAATGGGTTTTGATAGCATGTGATGCAGACCTTCAGGAGTGCATGTATGTTTCAAGATCATCCGGAGGAAGCAACATAATCCGGGTTTTAGTGCATGACATAACATCGAATCTTGGAAGCTCCTGTGAGAGTTCAGGGGAGTGA 2937 0.4208 MSEPEEDNQDFPPKTKTSLEEHGCSMDFDLDLETSWPLDHMSFLSNNPMSPFLFSNISDQPSSPLWTFTDGEDAKLAASAFSDCHKIFSCDSNSITEKLVEKDDNKTLLPPLLPPIENLDGYCVIKEKMTQALRYFKEWTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLNQYRTVSLMYMFSVDGENDGTLGLPGRVFQQKLPEWSPNVLYYSNKEYPRRDHAQHYNVRGTLALPVFEPSLQSCIGVIELIMTSLKINYAPEVEKICKALEAVNLRSSEFLDHPFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGFKKSCSSFDGSCMGQVCMSTTEAAAYIVDAHLWGFREACVEHHLQQGQGVAGRAFLSQNMSFCTNITQFCKTDYPLVHYALMFGLTSCFAICLRSFHTGNDDYVLEFFLPPGITEFNEQKMLLGSILSTMKQHFQSLNIAAGVELEENGSIEIIEATDEGIRLRTESIPIAQSIKSPPRPDASPNMEEEEGVPQDPSEVHVENVGGSVDPMSTLGNKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFDLNSLSNNQLPVASSFPEPSTPNKSSQQGSLSIRPSEPQMKENEFDASNVSETNKQIVMENQLLGGRKHSLEKEVINGEGVTIQEIGKDRKRNRTRSGSSEDSTNPTSHGSCHGSPPIEIPTIKDLFSPSNNEQHVLRGSPESGMQPTNALNSPTAHRMPDNVIAELQEPFGGLLIEDAGSSKDLRNLCPSVAEAILEDLAPEACGNNFPGPSYLAPPKQCRDTINNSATPFAARKEMKTVTIKATYREDIIRFRVSLNCGIVELKEEVSKRLKLEVGTFDIKYMDDDNEWVLIACDADLQECMYVSRSSGGSNIIRVLVHDITSNLGSSCESSGE 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04230 978 MobiDBLite consensus disorder prediction 1 20 - -
Mepo4g04230 978 ProSiteProfiles RWP-RK domain profile. 560 641 IPR003035 -
Mepo4g04230 978 Pfam RWP-RK domain 573 621 IPR003035 -
Mepo4g04230 978 ProSiteProfiles PB1 domain profile. 882 965 IPR000270 GO:0005515
Mepo4g04230 978 MobiDBLite consensus disorder prediction 653 695 - -
Mepo4g04230 978 Pfam PB1 domain 882 964 IPR000270 GO:0005515
Mepo4g04230 978 MobiDBLite consensus disorder prediction 726 740 - -
Mepo4g04230 978 SUPERFAMILY CAD & PB1 domains 879 968 - -
Mepo4g04230 978 MobiDBLite consensus disorder prediction 724 798 - -
Mepo4g04230 978 MobiDBLite consensus disorder prediction 767 798 - -
Mepo4g04230 978 CDD PB1_NLP 883 964 IPR034891 -
Mepo4g04230 978 SMART PB1_new 882 965 IPR000270 GO:0005515
Mepo4g04230 978 Gene3D - 879 962 - -
Mepo4g04230 978 PANTHER PROTEIN NLP8 59 977 IPR045012 GO:0003700
Mepo4g04230 978 MobiDBLite consensus disorder prediction 513 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04230 Mepo-Chr4 52113446 52118239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04230 259 978 NLP Transcription Factor Family AT4G24020 54.746 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mepo4g04230 PB1 1.2e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04230 - - gmx:100786118 1524.99