Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04223 ATGGGTAGCATCCAAGAAGCGGTATCGACTGCAGAAGAGCGAGTGGAAGAAAACGACACCGTTTATGTTGCGGTGGGATTGAACGCTGAGAAGAACAGAAAACTATTGCATTGGACAACTCACAAATTTTCTGGGAACAATATTTGCCTTCTTCACATTCATCAACCCGACCTTGTCAATTCCTTCAAAACAAATGTCTCTGAATATGAACCTAAAGACCATGCAATCAAGGCACTCCAAGAGCATGGTAGTCAAACAGTGCATGAACTCCTAGACCAGTACATCCTCACTCTGGTCCCAGCAGGGGTACAGGCCTCTAAATTGTTGATTGAGAAGGATGATATTGAGAAAGGGATCATAGGAGCTATTGCTCAACACAATATTAGATGTCTTGTAATGGGAGCAGCTGCAGACAGACATAAGATGGGGGTAGACAGTGAAAACACGCCTGGAATAGTGACTGCCCCTGTAGTGTTGATGCTCGACTCAAATACGGAAGCCAAACAATCTGAAAAGATTAAATCAGAATTGATTCCCGATGTATTGAAATATTATGATTCTGGTGACATGGAAGAGACTGAAAATGGCAATTCCCGCTGTTCTTTAAATGCAGAATGGTCCTTTAACAGTGTTGTTGCAAGAACAAAGTTGACAGACTTGCTTGTTTATGAGGATGATGAAGAATTACAAAACTGGCGTGCTAAGGAGATAAGTCTAAGAAAAGAAGTTGAAGTACAATTGGCAAGGGAAAAACAAGACGTACAAGAAATGAAGAACCAGCGAGATAAAATAATATGTGAATTGCATATGGTCCGAGACCAAAGTTCAGCTCTTAGAAACCAAATGTTTGAGTCCAAGTGTACGGTAACCGAGTTGGAAGAGAAGATTATATCAGCTGTGGACCTTTTGATAAGTTTCAAGGAAAAACGAGATAAGCTAAGGATTGAACATGCAAACGCAGTTAGGAAAGTTGAAGTGCTGAGAAAATTTGGAGAAATGGATACTACATCCTCTTATGTGGTAGAATTCCCTGCATTTTCCTTTATGGAGATCAATGAGGCAACTCAGGATTTTGACCAATCTTGGAAAATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCCAGTCGCCATAAAAATGCTGCCCTCTTATGGTTGTCAAAGCCAATCGGAGTTCCAGCATCAGGTAGAGGTTTTAAGTAGAGTACGACATCCAAACCTGTTAACACTTATTGGAAGCTGTGCAGAGTCTAAGTCACTTGTGTACGAATACCTAAACAACGGTAGCCTTGAAAGCCATCTTGCCTGCAAAGACAGGACTCCACTTCCATGGCAAATTCGAATATCCATTGCTGCTGACATATGCTCTGCTCTAATATTCCTTCACTCCAGCAAGCCTTGTATTATCCATGGGAATTTGAAGCCTAGTAAGGTTCTCCTTGATGCTAACTTTGTTGCCAAACTTGGTGACCTGGGGATTCCTTCTTTAGTCCAGCACAATATGGATTCAGCCGACACGGGCACAGTAGTATGTAATAACTCGCATAAACGTTTGGCGTATGTGGATCCAGAGTGTCTTGTCACTGGTAAATTTACACCAGAGTCAGACGTGTATTCGTTCGGAATCATACTGTTACAACTTCTAACTGGAAGACCACTTTCGGGGCTAGTTAGAGATATGAAATGCGCATTGGAAAAGGAAAATCTTAAAACTGTGTTGGACTTTTCAGCTGGTGAGTGGCCACTTCATCAAACCACACAACTGGCATACTTAGCATTGAGGTGTTGTGAAAAGACTTGGCTGGACCGGCCAGATCTTGTGTCAGAAATCTGGAGTGTTCTTAAACCATTCAGAACTATTTGCATCGACAGGAGACAAGAGTTGACTTCTAAGAAGCTTCAACGAGCTCCTTCTCATTTTGTCTGCCCCATTGTCCAGGAAGTTATGGAAGACCCATACATAGCTGCAGATGGCTTTACATATGAAGAAGAGGCAATAAGGGGATGGTTGGACAGTGGTCACAACACTTCCCCTATGACAAACCTCAAACTTGAACACACAGATTTGGTACCTAATTATGCATTACATAATGCCATTCTGGAGTGGCAGCAACTGTGA 2136 0.4223 MGSIQEAVSTAEERVEENDTVYVAVGLNAEKNRKLLHWTTHKFSGNNICLLHIHQPDLVNSFKTNVSEYEPKDHAIKALQEHGSQTVHELLDQYILTLVPAGVQASKLLIEKDDIEKGIIGAIAQHNIRCLVMGAAADRHKMGVDSENTPGIVTAPVVLMLDSNTEAKQSEKIKSELIPDVLKYYDSGDMEETENGNSRCSLNAEWSFNSVVARTKLTDLLVYEDDEELQNWRAKEISLRKEVEVQLAREKQDVQEMKNQRDKIICELHMVRDQSSALRNQMFESKCTVTELEEKIISAVDLLISFKEKRDKLRIEHANAVRKVEVLRKFGEMDTTSSYVVEFPAFSFMEINEATQDFDQSWKIGEGRYGSVYKGLLRNMPVAIKMLPSYGCQSQSEFQHQVEVLSRVRHPNLLTLIGSCAESKSLVYEYLNNGSLESHLACKDRTPLPWQIRISIAADICSALIFLHSSKPCIIHGNLKPSKVLLDANFVAKLGDLGIPSLVQHNMDSADTGTVVCNNSHKRLAYVDPECLVTGKFTPESDVYSFGIILLQLLTGRPLSGLVRDMKCALEKENLKTVLDFSAGEWPLHQTTQLAYLALRCCEKTWLDRPDLVSEIWSVLKPFRTICIDRRQELTSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLDSGHNTSPMTNLKLEHTDLVPNYALHNAILEWQQL 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04223 711 SMART Ubox_2 645 708 IPR003613 GO:0004842|GO:0016567
Mepo4g04223 711 ProSiteProfiles U-box domain profile. 641 711 IPR003613 GO:0004842|GO:0016567
Mepo4g04223 711 SUPERFAMILY Protein kinase-like (PK-like) 334 612 IPR011009 -
Mepo4g04223 711 Gene3D Phosphorylase Kinase; domain 1 330 430 - -
Mepo4g04223 711 ProSiteProfiles Protein kinase domain profile. 358 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo4g04223 711 ProSitePatterns Protein kinases ATP-binding region signature. 364 385 IPR017441 GO:0005524
Mepo4g04223 711 Pfam Protein tyrosine and serine/threonine kinase 363 612 IPR001245 GO:0004672|GO:0006468
Mepo4g04223 711 Gene3D HUPs 12 137 IPR014729 -
Mepo4g04223 711 PANTHER OS02G0152300 PROTEIN 21 707 - -
Mepo4g04223 711 CDD RING-Ubox_WDSUB1-like 643 698 - -
Mepo4g04223 711 SUPERFAMILY RING/U-box 639 709 - -
Mepo4g04223 711 Coils Coil 240 267 - -
Mepo4g04223 711 Pfam U-box domain 642 709 IPR003613 GO:0004842|GO:0016567
Mepo4g04223 711 Gene3D Transferase(Phosphotransferase) domain 1 431 626 - -
Mepo4g04223 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 711 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04223 Mepo-Chr4 52069854 52079837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04223 260 709 U-box Gene Family AT3G49060 51.542 2.60e-156 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Mepo4g04223 PK_Tyr_Ser-Thr 2.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04223 - - gmx:100799675 1051.58