Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04156 ATGTCATTCCGTAGTATTGTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCGAGGCGGAGTTTTGAGGTAAGACTTCCTGGACATCAAAGGGGCAAGTCGCGTAGTTCGGTCCATGAGTTGCATGATCAACCTCCGGTTATACAGAACAGCCCATGGGCTAGCCTTCCACCGGAGCTTCTTCGTGATGTTATTAAGAGACTGGAAGCAACTGAGAGTACTTGGCCTGGTCGTAAGCATGTGGTTGCTTGTGCTGCAGTGTGCAAGTCGTGGAGAGAAATGTGCAAAGAAATTGTCAACAGTCTTGAATACTGTGGGAAGATTACTTTCCCTGTTTCTCTGAAGCAGCCGGGGTATAGGGATGGACCCATCCAGTGTTTCATCAAAAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTTGCCTCAGTCCCGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGTACCAGAAGAACGACTTGCACAGAGTATGTTATATCGATGGATGCAGATAACATATCAAGATCTAGTAACACTTACATCGGAAAGCTTAGGTCTAATTTTCTTGGAACCAAGTTCATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGGCTCCTCCTGGACGCAGCCGTAGATTCAACTCGAAAAAAGTTTCACCAAAGGTCCCGAGTGGCAGTTACAACATCGCCCAGGTCACCTATGAGTTGAATGTCCTCGGTACTAGAGGCCCGCGAAGGATGAATTGCTCTATGCACTCAATCCCTGCATCATCCCTCGAGCCTGGTGGTGTTGTCCCAGGCCAGCCGGAGCTCATTCCCCGCAATCTTGAGGATTCTTTCCGTAGTTTATCCTTTGCACGATCAATTGATAACTCAACTGAGTTTAGCAGCTGTAGGTTCTCAGACATAATGGGAGCTGTCAATGAAGAGGAGGAGGAGGGGAAGGAGAGACCTCTAGTTCTTAAGAACAAGTCTCCTAGATGGCATGAACAGCTGCAATGTTGGTGCCTTAACTTTAGGGGACGAGTGACTGTTGCGTCCGTTAAGAACTTTCAGCTGATCGCTGCAGCACAGCCTGCACCTGTCGCTCCTCATGCCGCAACAGGACCTGCACCCTCGCAGCCAGCACAGTCAGACCATGACAAGATTATTCTTCAGTTTGGTAAAGTCGGCAAGGATATGTTTACAATGGACTATCGATACCCTCTCTCGGCATTTCAGGCTTTTGCGATATGTTTGACTAGCTTTGACACAAAACTTGCATGTGAATAG 1296 0.4715 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHQRGKSRSSVHELHDQPPVIQNSPWASLPPELLRDVIKRLEATESTWPGRKHVVACAAVCKSWREMCKEIVNSLEYCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQLAPPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCSMHSIPASSLEPGGVVPGQPELIPRNLEDSFRSLSFARSIDNSTEFSSCRFSDIMGAVNEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPAPVAPHAATGPAPSQPAQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04156 431 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Mepo4g04156 431 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Mepo4g04156 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Mepo4g04156 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Mepo4g04156 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Mepo4g04156 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Mepo4g04156 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Mepo4g04156 431 Pfam Tub family 114 426 IPR000007 -
Mepo4g04156 431 FunFam Tubby-like F-box protein 48 101 - -
Mepo4g04156 431 Pfam F-box domain 53 99 IPR001810 GO:0005515
Mepo4g04156 431 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Mepo4g04156 431 Gene3D - 48 102 - -
Mepo4g04156 431 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Mepo4g04156 431 SUPERFAMILY Tubby C-terminal domain-like 103 431 IPR025659 -
Mepo4g04156 431 CDD F-box_AtTLP-like 53 97 - -
Mepo4g04156 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Mepo4g04156 431 PANTHER TUBBY-RELATED 45 429 - -
Mepo4g04156 431 Gene3D Tubby Protein; Chain A 110 431 IPR025659 -
Mepo4g04156 431 FunFam Tubby-like F-box protein 110 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04156 Mepo-Chr4 51345572 51349283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04156 1 431 TUB Transcription Factor Family AT1G76900 70.330 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mepo4g04156 Tub 3.7e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04156 K19600 - gmx:100810531 765.377