Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04140 ATGTCTTGTCCTATGGTTTCAGCGCCGACTCAGCATGGATTGGGCCAGGCCCAAAATGAGTGGGTCCAAGTCCAACAAGGAAGTGGTTATTTTCCTATGTTGTCAGGTTTTGTCCCTGTCTCTTCTAGTTCTAATTCTCCTCGTATGTATTCTTCTAGTGCTGCTCTATTGGGGTCTAGTTCATGGGTTGGACACAAAAGAGTGCGTGAAGATGGTCTTCATAAGAGTGATGATGATGTTGGTGGTTCTTCTCAACAAGATATGAGAAATATTGCTGATTTCAGATTACCTTCTTCACAGGGAAACTCATCATCAGTAACAGAAGCAACAACTTCAAGTACAAGCAATGTAACACAATCTAGTGAAGCAGCTTCGACAACAAACGAAGAAGAAACCGGAGAGAGAAGAAGAAGATACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCAGCAGAGATTCGAGATCCACACAAAGCAGCAAGAGTATGGCTTGGAACATTTGAAACTGCAGAAGCTGCAGCAAGAGCTTACGATGAAGCTGCATTAAGATTCAGAGGAAACAGAGCAAAACTCAATTTCCCTGAAAATGTTCCGGCAACAAGATCAACTTTCCCGGCGAATACTTCAACAGGTTCTGTTTCTCCGGCAACCCATTATTCACCTGCACCACCGCAAATGCAGCCACAACAACAACCTTTTGTTCAGTTTCAAAGCTCTTCTGATATGTTGAGAGACTATTATCAATATTCTCAGCTTCTGAAAGGTTCTGGTGATTTTCAAGGACTTGAACAATGGTTCTATGAATCACAAATGGCGGCGATACATTCATCTTCTTCGATGTTATCGCCTTCTCCGTCACTTTCTTTGTCATCTTCTTCATGTTCAACTGCATTTTCACCTTCTAGTCAATTATCCTCTGTTTCACTTCCCCTGTTTCCTGGTCAGCAAATGGAGTTTTTCCGGCCACCGGAAGATCACGCTCACGGCGGAGGATATAGTAGTGGGTCCCATTTTCCACCTTCAACATGGTCAGATACTGGCGGTTATCATCCTCCTCCTCCTCCACCTTCTTCTAGTTGA 1083 0.4386 MSCPMVSAPTQHGLGQAQNEWVQVQQGSGYFPMLSGFVPVSSSSNSPRMYSSSAALLGSSSWVGHKRVREDGLHKSDDDVGGSSQQDMRNIADFRLPSSQGNSSSVTEATTSSTSNVTQSSEAASTTNEEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGNRAKLNFPENVPATRSTFPANTSTGSVSPATHYSPAPPQMQPQQQPFVQFQSSSDMLRDYYQYSQLLKGSGDFQGLEQWFYESQMAAIHSSSSMLSPSPSLSLSSSSCSTAFSPSSQLSSVSLPLFPGQQMEFFRPPEDHAHGGGYSSGSHFPPSTWSDTGGYHPPPPPPSSS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04140 360 MobiDBLite consensus disorder prediction 95 127 - -
Mepo4g04140 360 SUPERFAMILY DNA-binding domain 138 196 IPR016177 GO:0003677
Mepo4g04140 360 SMART rav1_2 138 201 IPR001471 GO:0003700|GO:0006355
Mepo4g04140 360 CDD AP2 146 197 IPR001471 GO:0003700|GO:0006355
Mepo4g04140 360 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700|GO:0006355
Mepo4g04140 360 PRINTS Ethylene responsive element binding protein signature 161 177 IPR001471 GO:0003700|GO:0006355
Mepo4g04140 360 MobiDBLite consensus disorder prediction 318 360 - -
Mepo4g04140 360 Pfam AP2 domain 138 187 IPR001471 GO:0003700|GO:0006355
Mepo4g04140 360 MobiDBLite consensus disorder prediction 198 232 - -
Mepo4g04140 360 FunFam Ethylene-responsive transcription factor 2 137 196 - -
Mepo4g04140 360 PANTHER DNA-BINDING DOMAIN 105 265 IPR044808 GO:0003700|GO:0009873
Mepo4g04140 360 Gene3D AP2/ERF domain 137 197 IPR036955 GO:0003700|GO:0006355
Mepo4g04140 360 MobiDBLite consensus disorder prediction 95 145 - -
Mepo4g04140 360 ProSiteProfiles AP2/ERF domain profile. 138 195 IPR001471 GO:0003700|GO:0006355
Mepo4g04140 360 MobiDBLite consensus disorder prediction 198 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04140 Mepo-Chr4 51164889 51167513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04140 84 244 AP2-EREBP Transcription Factor Family AT5G61890 49.133 1.27e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo4g04140 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04140 - - tpra:123903609 398.667