Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04104 ATGGCTGCGATTTCATCACCGATGGTTCAGTCTCCGACTATGGTGGCTCCGGCGACGGCAGCATTGACCGGAGGACCATTTGCGAATGCGTCGCTTTACGTTGGCGATCTCGAAGAGAGTGTAAATGAAGGGCAGCTTTTTGATCTGTTCAGCCAAGTCGCTCAGGTTGTTTCAATTAGGGTTTGTAGGGATCAGACTAGGCGATCCTCTCTTGGTTACGCTTATGTCAACTTCACCAATGCTCAGGATGCGGCCAATGCGAAGGAACTTCTCAACTTCACTCCTCTAAATGGGAAACCTATTCGTATCATGTTTTCTCAACGCGATCCAAGTGTTCGCAAAAGTGGATCAGGCAATGTGTTCATTAAGAACCTGGACACATCAATTGATCACAAGGCATTGCATGACACTTTTGCTGCGTTTGGCCCTGTACTTTCTTGTAAGGTGGCTCTTGACGGTAATGGTCAGTCAAAAGGGTATGGCTTTGTTCAGTTTGACAATGAAGAAGCTGCAAAGAGTGCTATCAAACAGTTGGATGGCATGTTGATAAATGATAAACAAGTCTATGTTGGGTTTTTTGTTCGCCACCAGGAAAGGGCTAGGACAAATGGATCGCCCAAGTTCACTAATGTGTATGTGAAAAATCTTCCTGAAGCATCAACTGATGAGGACTTGAAACAACTTTTTGGCCCCTTTGGCATGATAACTAGTGCAACAGTCATGAAAGACGCAAACGGGAAATCTAGATGCTTTGGTTTTGTGAATTTTCAAAGTCCAGATTCAGCTGCTGCTGCAGTTGAGAAGTTAAATGGCACTGCTATCAATGATGACAAGGTTTTATTTGTGGGGAGAGCTCAGAGGAAAGCAGAAAGAGAGAATGAGTTGAAAGCCAAGTTCGAGCAGGAAAGAATTAACAGATATGAGAAATTGCAAGGGGCTAATTTGTACCTGAAAAATCTTGATGACGATTTTAATGAAGAAAAGTTGAAAGATCTATTTTCTGAGTTTGGAACTGTAACATCTTGCAGGGTGATGTTTGATTCACATGGTCATAGCAAGGGTTCTGGTTTCGTGGCCTTTTCTACTCCCGAGGAAGCAAATAAAGCGTTGAATGAAATGAATGGAAAGTTGGTGGGAAGAAAGCCTTTGTTTGTTGCTGTGGCTCAGCGCAAAGAAGAAAGGAAGGCTCAGTTGCAGGCACATTTTGCTCAAATCCGTGCCCCTGGTGGAATGGCACCGCTGGCTGCAGGACTTCCTGGGTACCATCCAGGGGCACCAAGACTTGCCCCTCAGCAGTTGTATTACAGTCAAGGCACACCTGGCTTCATACCACCTCAGCCTGCTGGATTTGGTTTCCAGCAGCAGATCTTGCCTGGAATGCGGCCTGGTGTTGCTCCGAATTTTGTTATGCCATATCAGCTCCAAAGACAGGGTCAAAATGGGCAAAGGATAGGTGCTCGACGAAATGGAAACCTCCAACATGTGCACCAGAACCAACAGATGTTGCATCGTAACTCCAACCAAGGGTATAGATATATGGCCAACAATCGAAATGGAATGGATCCGTCTGGAGTTCCTCAAGGTCTAGCAGGTCCAATGTTGCCCATGACATTTGATGGTTCTGGAGTTTCTGCTGTTCCTATTGATAATCAGCGTCAAGGGTCTACATCACTTGCCTCTGCTTTAGCTTCTGCTACCCCAGACAATCAGCGCATGATGCTGGGTGAACATCTATATCCCCTTGTGGACCGTCTTACACCAAACCAACATACTGCAAAGGTGACAGGGATGTTGCTTGAAATGGACCAATCTGAAGTGATCCACCTTATTGAATCTCCTGATGCCCTAAAAATAAAGGTCTCTGAGGCATTGCAGTATGGAGGAGTGATTGGTGCTTTCAACTGTCAAGGGTCAGGGTGGGACCCAAAAGTGCACACATTCAGGGGCTTCCCTGAATGCTACAAGCCCATAAGTGGTTCTGTGCATGTAACTGAGGTTGAATGGGATCAAAAGAAAGAAGCAACACATTTGGGCAAGGCTGAAGAGTATGTAGTCTACTTGAATCAAGCTGAAGAACTTTGTTTGATGACTCCAAAGTCTGAACCAATCAAATTTATCATTCAACCATCTACCTTTGAGTTATACAGTTTTGTTCCAGTCACAAAGCTAGGTGGCATCATCAAATTTGCACCAATTGGATTGGCAAACATGTTCAACAGTGGTGGAACAATTCTAGATTTGGAATATGTTGAAAGTTGTGCTAAGATTAAGGTTAAAGGTGGTGGAAATTTCCTTGCTTATTCAAATGAATCACCAAAGAAGTGCCAATTGAATGGTTCTGAAGTGGCTTTTGAGTGGCTGTGTGATGGAAAATTGTCTCTCAATGTTCCTTGGATTGAAGAGGCTGGCGGAGTTTCTGATTTGGCAATTTTCTTCTAG 2439 0.444 MAAISSPMVQSPTMVAPATAALTGGPFANASLYVGDLEESVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELLNFTPLNGKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTNGSPKFTNVYVKNLPEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERINRYEKLQGANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMFDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVAQRKEERKAQLQAHFAQIRAPGGMAPLAAGLPGYHPGAPRLAPQQLYYSQGTPGFIPPQPAGFGFQQQILPGMRPGVAPNFVMPYQLQRQGQNGQRIGARRNGNLQHVHQNQQMLHRNSNQGYRYMANNRNGMDPSGVPQGLAGPMLPMTFDGSGVSAVPIDNQRQGSTSLASALASATPDNQRMMLGEHLYPLVDRLTPNQHTAKVTGMLLEMDQSEVIHLIESPDALKIKVSEALQYGGVIGAFNCQGSGWDPKVHTFRGFPECYKPISGSVHVTEVEWDQKKEATHLGKAEEYVVYLNQAEELCLMTPKSEPIKFIIQPSTFELYSFVPVTKLGGIIKFAPIGLANMFNSGGTILDLEYVESCAKIKVKGGGNFLAYSNESPKKCQLNGSEVAFEWLCDGKLSLNVPWIEEAGGVSDLAIFF 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04104 812 Coils Coil 282 302 - -
Mepo4g04104 812 CDD RRM3_I_PABPs 208 288 - -
Mepo4g04104 812 Gene3D - 551 627 - -
Mepo4g04104 812 SMART poly_2 566 633 IPR002004 GO:0003723
Mepo4g04104 812 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Mepo4g04104 812 CDD RRM4_I_PABPs 312 390 - -
Mepo4g04104 812 FunFam Polyadenylate-binding protein 200 295 - -
Mepo4g04104 812 PANTHER RNA BINDING PROTEIN 29 92 - -
Mepo4g04104 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Mepo4g04104 812 Gene3D - 119 202 IPR012677 -
Mepo4g04104 812 Gene3D - 203 310 IPR012677 -
Mepo4g04104 812 Gene3D - 311 410 IPR012677 -
Mepo4g04104 812 SUPERFAMILY RNA-binding domain, RBD 118 288 IPR035979 GO:0003676
Mepo4g04104 812 Gene3D - 25 118 IPR012677 -
Mepo4g04104 812 FunFam Polyadenylate-binding protein 296 401 - -
Mepo4g04104 812 FunFam Polyadenylate-binding protein 116 199 - -
Mepo4g04104 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Mepo4g04104 812 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 554 632 IPR002004 GO:0003723
Mepo4g04104 812 SUPERFAMILY PABC (PABP) domain 499 624 IPR036053 GO:0003723
Mepo4g04104 812 Pfam Raffinose synthase or seed imbibition protein Sip1 619 796 IPR008811 -
Mepo4g04104 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Mepo4g04104 812 SMART rrm1_1 31 104 IPR000504 GO:0003723
Mepo4g04104 812 SMART rrm1_1 314 386 IPR000504 GO:0003723
Mepo4g04104 812 SMART rrm1_1 210 283 IPR000504 GO:0003723
Mepo4g04104 812 SMART rrm1_1 119 191 IPR000504 GO:0003723
Mepo4g04104 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Mepo4g04104 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Mepo4g04104 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 382 IPR000504 GO:0003723
Mepo4g04104 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 278 IPR000504 GO:0003723
Mepo4g04104 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Mepo4g04104 812 SUPERFAMILY RNA-binding domain, RBD 21 115 IPR035979 GO:0003676
Mepo4g04104 812 CDD RRM2_I_PABPs 116 191 IPR045305 -
Mepo4g04104 812 FunFam Polyadenylate-binding protein 23 115 - -
Mepo4g04104 812 Pfam Poly-adenylate binding protein, unique domain 562 625 IPR002004 GO:0003723
Mepo4g04104 812 SMART rrm2_1 119 191 IPR003954 GO:0003676
Mepo4g04104 812 SMART rrm2_1 314 386 IPR003954 GO:0003676
Mepo4g04104 812 SMART rrm2_1 210 282 IPR003954 GO:0003676
Mepo4g04104 812 SMART rrm2_1 31 104 IPR003954 GO:0003676
Mepo4g04104 812 SUPERFAMILY RNA-binding domain, RBD 309 404 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04104 Mepo-Chr4 50783921 50793563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04104 9 624 Eukaryotic Initiation Factors Gene Family AT1G22760 57.911 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04104 K13126 - gmx:100783163 1013.83