Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04095 ATGGTAGTAAAGAGGAAGAAGATTGGAGGAGCAACGCTTCACCTTCTTCCTCTCGATTTCATGGCTGCTTCTCAGTCCCAACATCGCACTGTCTTTGTTGGGAACATACCGTATGATGCTACAGAGGAACAGCTTAAGGAAATTTGCCGGGAGGTTGGTCCTGTTATCAGTTTTAGATTAGTTACTGATAGAGAAACTGGGAAACCTAAGGGTTACGGATTCTGTGAGTATACGGATGAAGAAACGGCGTTAAGTGCTCGTAGGAATCTTCAGGGTTATGAAATTAATGGACGTCAATTACGTGTTGATTTCGCGGAGAATGATAAAGGGAATGATAGAAATAAAGATCAGGGTCGCGGGGGACCAGGAATGACAACAAATGCAGATCCTCAGAAACAAGTAGGCATCCCAGCTGTTCAAGGGGAATCCGCTCAAGCAGCTCAACATCAACCTATGGGTCTTCATATTGCCGTAACAGCTGCAGCTGTCATGACTGCAGCTCTAGGTGGTGCTCAGACTGGCATCCCGTCAAATCAAAATGGTTTGCAGAGTCAGCAAGCATTAGCAAATGATCCTTTAACTTTGCATCTGGCCAAAATGTCCAGGAGTCAGCTATCTGAGATAATCTCAGAGCTTAAGGGAATGGCTACACACAACAAGGACTTGTCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCTAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGGATGGTCAACCCCCAAATGTTACAAATGCCAAACCTTAGACAAGTTTCAGATCAAACCTCGCAGTCTTTAATGAATGAAGGCCACCTTGGTCAGACTCAGCAAACATTGGTTCCGACTGTGGCTGGTCTACCTCCTTATGGACAGAGCAAGTTGCAGTTTGGCTTGACACCTTATATTCAAGAAGGCCAAGTCAGCACTCTCCCTCATAACCCTTCGGTTCCCAGTCAATCGACCGTAAATCCAAAGCCTCCTCTGCAGCCCAGAATTCCCCCTCAACATCATCAAATCAACCATTTTGTACAGCCTGGAGCAGGGCAGAATAATTTAATACTTCCTTCCATACGTCCCCCAACTACGGGCAGTTTTTCTGTTAGGCCTCCATTTCAACAGGCAAATTCAACTGTCGTGAACCAGCAACCGCATGCCTCGTTTTTACAACAACCAGTACGTGTTGGAAGCTCAACTGTCTCACATAATATTCATATGGTTCGTCCAGATGCAAGCTTTCAGGCTGGCCCCTCCATGCCATCTGGTGTTTCTCAGTTATTTAGCAAGGAAGGTGATAGACCTTCCAACGCTCTTGAGGATTGGGCCAAGAGTAGTAGTAAATATTCCAACGTATCTTTCGGGGTAGAGAATACAGGCGTGGTTCATGATAATCCAGAATCCTTTACTCGACCATCAAAGCTCACTAGATTGAATGACGGAAGGGGTCTCTCTGCTGGGACTTCAGACGTACCTGTTTCCAACGGATCATCCCATGTTATCGGAAGTACCTCATTACCTGTACCTGCAGTTCCTAAAGCAGATGTGCGGCACTCTGATCAACAATCTTCACAGCTTCCATCTGACATGGAGTCTGTTTTACTGCAACAAGTGTTGAATCTAACACCAGAGCAATTGAGTTCTTTGCCACCAGAGCAGCAACAACAGGTCATTCAGCTCCAACAAGCGCTTAAGCGAGATCAGATGCAGCACTCATAA 1719 0.4602 MVVKRKKIGGATLHLLPLDFMAASQSQHRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNKDQGRGGPGMTTNADPQKQVGIPAVQGESAQAAQHQPMGLHIAVTAAAVMTAALGGAQTGIPSNQNGLQSQQALANDPLTLHLAKMSRSQLSEIISELKGMATHNKDLSRQLLLSRPQLPKALFQAQIMLGMVNPQMLQMPNLRQVSDQTSQSLMNEGHLGQTQQTLVPTVAGLPPYGQSKLQFGLTPYIQEGQVSTLPHNPSVPSQSTVNPKPPLQPRIPPQHHQINHFVQPGAGQNNLILPSIRPPTTGSFSVRPPFQQANSTVVNQQPHASFLQQPVRVGSSTVSHNIHMVRPDASFQAGPSMPSGVSQLFSKEGDRPSNALEDWAKSSSKYSNVSFGVENTGVVHDNPESFTRPSKLTRLNDGRGLSAGTSDVPVSNGSSHVIGSTSLPVPAVPKADVRHSDQQSSQLPSDMESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALKRDQMQHS 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04095 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Mepo4g04095 572 MobiDBLite consensus disorder prediction 412 436 - -
Mepo4g04095 572 Pfam Transcription termination and cleavage factor C-terminal 534 566 IPR026896 GO:0031124
Mepo4g04095 572 Pfam Hinge domain of cleavage stimulation factor subunit 2 184 253 IPR025742 -
Mepo4g04095 572 MobiDBLite consensus disorder prediction 458 528 - -
Mepo4g04095 572 Gene3D - 520 568 IPR038192 -
Mepo4g04095 572 Gene3D - 179 255 - -
Mepo4g04095 572 MobiDBLite consensus disorder prediction 488 504 - -
Mepo4g04095 572 CDD RRM_CSTF2_RNA15_like 29 105 - -
Mepo4g04095 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Mepo4g04095 572 Gene3D - 21 135 IPR012677 -
Mepo4g04095 572 MobiDBLite consensus disorder prediction 101 116 - -
Mepo4g04095 572 FunFam Cleavage stimulating factor 64 180 255 - -
Mepo4g04095 572 FunFam Cleavage stimulating factor 64 22 138 - -
Mepo4g04095 572 SUPERFAMILY RNA-binding domain, RBD 20 126 IPR035979 GO:0003676
Mepo4g04095 572 MobiDBLite consensus disorder prediction 458 475 - -
Mepo4g04095 572 MobiDBLite consensus disorder prediction 101 131 - -
Mepo4g04095 572 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 22 568 - -
Mepo4g04095 572 MobiDBLite consensus disorder prediction 418 432 - -
Mepo4g04095 572 SMART rrm1_1 30 103 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04095 Mepo-Chr4 50679493 50685908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04095 30 104 Eukaryotic Initiation Factors Gene Family AT2G23350 29.333 1.42e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04095 K14407 - gmx:100794399 712.99