Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04083 ATGCTCCTTTTTTTTCTTCTTTCTGCCTCGTTCATTATATTTCCGCCGCTGGTTCAAGCATCCATCACAGTTAACACCGCCTTCGCAGTAGAAATTGCTTTTCAAGATGACAGGATAAAGTTTGATCGGTTTTTTCAACTTCGACAAGAATTAACAAGTCATAAAAACCATCATGATGAGTTTTTAAACCTAGTTGAAGCAAGAGTCAAGATCTTGTTTGAAGGACATACAGATTTGATTTTGGGATTCAACATCTTCCTGCCAAACAACGAGCCCTATAGAGTTCACGATGATCTATCCATGTATCTTAAGAAAGTAAATGTTGCGTTTCAATATGACAGAATAAAGAATGATCAGTTTAACGAACTTCGATATGAATTAATAAGTCATAAATATGATCATGATGAGTTTTTAAACCTTGTCAAAGAAAGAGTGAAGATCTTGTTTGAAGGGCATGCAGATTTAATGTTGGGATTCAACATCTTGCTGCCAAAGGAACATCAAATCACACTTTCGTTAGGGTCTAAAGATGCATCAGCGTTTCTTGAGGCTGTAAAAGTATCGTTTCATGATAAGAGGGAAACTTATAATGAGTTTTTGAATCTCCTAAACGATTTCAAGGATCAAAGTGTTGTGGCAAGAGTGAAGGAGCTGCTTAAAGGGCATACCAATTTAATTTTGTGGTTCAACTACTTCCTGCCAAAGGAACATCAAATCACACTTCGATTTCAACTTGACACCACCGGTATAAAGGTGAAAAAGGTAGAAGAGAGCGGTGAACTTCCTTGGGATGTGCTTGATATCATTTCCAAAATACTAGATTTTGATTACTTTTTTCAGTTTGCTGGTGTGTTCAAGAATTGGAGGGTTTTTCATAAAATTTCTTGGAGAAATTTCTTGGCATCCCAAGAACCATTACTTCTTCAAATTTCGAATCAAGTTAAGAAATCATATTTCTTTATTACCATACCTGACCAAAAAGTTAATTGCTTGGAGATGATGAAGCACTTCCTCTACCCTACTTATGTTTCGTCTTCTGGAGGATATTTTATCATGACAAAATACAACCGTTTATTTATGCTAATCAACCCATTTACAAGAATAAAGAAGGTAATCAATACCCTTCCTTCTGAAGTTAACTATTCTTATTTACCTGATCGTGCCTTGCTTGCTTTTGACAAATGCTCTAAGGAATTTGTCTTGGTGGTTTTATGCAAAAGTCGATTGCATGTCTATCAATCTCGAAATTCTTGTTGGGTTACTTATTCGACAACGGAAAATGCAGAGATGGTTGTTGACTTTGTGGTTTTCAATATAATATATGTTATCACTAACAAAGCCAACACTGGGGTACTCAGCTTGAATTCTGCAAATATTAAATTTCTCAAGCTGACTATTACTCCCAACTTAACAATTTCCTTGTACCTTAGGTTGGTTGAATGTAATGAACAACTTTTAGTGGTTGATTTATTAATGACAAAAATAAGGAATGTCTACAAGGTAGACTTCTCAACAATGAGTTTTGTCAAACTGGAAACTTTGGGCGATACTGCATTATTTTATGTTTCAAAATTTGATAGGAGTAACTGTTATGCATTGAGCAACCCGGTCATGTGGGGATATGAGAGCAACTCTGTGTACGTCATCGACATGTTCCGTGTATTCAGGGGAATTGAAAAAATGCATCATGCTTCCGACTCCTCATGGAGCAAGTTCTTCCATGGTCGAATGGTGTTTTAG 1740 0.3609 MLLFFLLSASFIIFPPLVQASITVNTAFAVEIAFQDDRIKFDRFFQLRQELTSHKNHHDEFLNLVEARVKILFEGHTDLILGFNIFLPNNEPYRVHDDLSMYLKKVNVAFQYDRIKNDQFNELRYELISHKYDHDEFLNLVKERVKILFEGHADLMLGFNILLPKEHQITLSLGSKDASAFLEAVKVSFHDKRETYNEFLNLLNDFKDQSVVARVKELLKGHTNLILWFNYFLPKEHQITLRFQLDTTGIKVKKVEESGELPWDVLDIISKILDFDYFFQFAGVFKNWRVFHKISWRNFLASQEPLLLQISNQVKKSYFFITIPDQKVNCLEMMKHFLYPTYVSSSGGYFIMTKYNRLFMLINPFTRIKKVINTLPSEVNYSYLPDRALLAFDKCSKEFVLVVLCKSRLHVYQSRNSCWVTYSTTENAEMVVDFVVFNIIYVITNKANTGVLSLNSANIKFLKLTITPNLTISLYLRLVECNEQLLVVDLLMTKIRNVYKVDFSTMSFVKLETLGDTALFYVSKFDRSNCYALSNPVMWGYESNSVYVIDMFRVFRGIEKMHHASDSSWSKFFHGRMVF 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04083 579 SUPERFAMILY PAH2 domain 172 235 IPR036600 GO:0006355
Mepo4g04083 579 SUPERFAMILY PAH2 domain 30 90 IPR036600 GO:0006355
Mepo4g04083 579 PANTHER OS09G0392200 PROTEIN 247 553 IPR044619 -
Mepo4g04083 579 Pfam Paired amphipathic helix repeat 194 233 IPR003822 GO:0006355
Mepo4g04083 579 Gene3D Paired amphipathic helix 177 234 IPR036600 GO:0006355
Mepo4g04083 579 Gene3D Paired amphipathic helix 28 88 IPR036600 GO:0006355
Mepo4g04083 579 Gene3D Paired amphipathic helix 100 164 IPR036600 GO:0006355
Mepo4g04083 579 SUPERFAMILY PAH2 domain 97 166 IPR036600 GO:0006355
Mepo4g04083 579 ProSiteProfiles PAH domain profile. 169 236 IPR003822 GO:0006355
Mepo4g04083 579 FunFam Paired amphipathic helix protein Sin3 177 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04083 Mepo-Chr4 50519071 50524489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04083 175 241 WRKY Transcription Factor Family AT4G12020 48.611 5.67e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo4g04083 PAH 8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04083 - K11644 cam:101488742 484.567