Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04066 ATGGGTTCCTCGAATCTTTGCTTCTTTTTCTTCTCTTTGTTGAGTTTCTGTGCTATGGCGGCTGCTAAGGTTGTGTTGATTGGGAACAACATCACTCTCTCGTTTGATGATATTGAAGCTAATTTCGCTCCATCGGTCAAAGGTTCTGGAGAATACGGAGCCTTATTCTTGGCAGAGCCGCTTGATGCATGTACAGAACTTACGAATAAAGCTAGAACACTTTCGAATGCTAGTTCACCTTTTGTTTTGATGGTTAGAGGGGGCTGTAGCTTTGAGGACAAGGTTAGGATTGCACAAAGTGCTGGCTACAAAGCTGCAATTGTCTATGACAATGAAGATGGTGGCATCCTGGTTGCAATGGCAGGAAATTCTGCTGGTGTAAGAATACATGCGGTATTTGTTTCAAAAGCTTCGGGTGAAATACTAAAGAAATACACTGGTTTAACTAACGTGGAAACATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCGTTCATTTCCCTGCTAGCTATGTCTGCAGTGCTGGCCACTTGTTTCTTCGTCCGCAGGCATCGTATACGAAGAGAAAGGCCTCGAACTTCTTCTCATGTTCGTGAATTTCATGGCATGAGTAGTCGCTTAGTGAAAGCAATGCCAAGTTTGATTTTTACTTCTGCTTTGGAAGATAACTGTACATCAAGAACATGTGCCATCTGCCTTGAAGATTATTGCGCTGGAGAGAAACTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCCTGCGTGGATTCTTGGCTTACTTCGTGGAGAACCTTTTGCCCAGTTTGCAAGCGTGATGCAAGAACGGGTCTGGCTGATCCACCACCTTCAGAATCCACACCTCTGCTGTCATCAACCCCGTCATCTGCGGCATCCTCTTTCGTGTCTTCTATGAGGTCATCATTTGCTTCATCTTCAGCAATACAAATTGGTTCACCGTCGCAATCTGTTTCTCGTAACCACTCTTTAGCAAGTACCCCTTACAATCAGCCATCTCTAAGGTCCTACCGTCAATCCCCCTCCCTAAGCTTCAGCCGTAGCTCCGTGGATCTTAGGAACGCATCCCAAAGATCTCTAGCTTCACACATGAATTCACCACGTTCCATCGGTTATCCATCTTTATCATCTCTTAACTCAAGGTACTTGCCTTCACACATTCCAAGTCCAAGCAATGCTTCAGTAAGTTTCCTCGGTTCATCCAGTCATCAGCAGCATCCACTCCGATATAGTGAGTCAGCCTCAAGCTTCTCACCATTTGCGTCTGCCAACTCCCTTCCGGAATGTTGA 1326 0.4525 MGSSNLCFFFFSLLSFCAMAAAKVVLIGNNITLSFDDIEANFAPSVKGSGEYGALFLAEPLDACTELTNKARTLSNASSPFVLMVRGGCSFEDKVRIAQSAGYKAAIVYDNEDGGILVAMAGNSAGVRIHAVFVSKASGEILKKYTGLTNVETWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRTSSHVREFHGMSSRLVKAMPSLIFTSALEDNCTSRTCAICLEDYCAGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLADPPPSESTPLLSSTPSSAASSFVSSMRSSFASSSAIQIGSPSQSVSRNHSLASTPYNQPSLRSYRQSPSLSFSRSSVDLRNASQRSLASHMNSPRSIGYPSLSSLNSRYLPSHIPSPSNASVSFLGSSSHQQHPLRYSESASSFSPFASANSLPEC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04066 441 SMART ring_2 235 276 IPR001841 -
Mepo4g04066 441 SUPERFAMILY PA domain 80 145 IPR046450 -
Mepo4g04066 441 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Mepo4g04066 441 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 194 282 - -
Mepo4g04066 441 MobiDBLite consensus disorder prediction 420 441 - -
Mepo4g04066 441 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 158 292 - -
Mepo4g04066 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 282 IPR013083 -
Mepo4g04066 441 CDD PA_C_RZF_like 20 163 IPR044744 -
Mepo4g04066 441 Gene3D - 18 153 - -
Mepo4g04066 441 Pfam PA domain 76 142 IPR003137 -
Mepo4g04066 441 Pfam Ring finger domain 234 277 IPR001841 -
Mepo4g04066 441 MobiDBLite consensus disorder prediction 325 353 - -
Mepo4g04066 441 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 22 156 - -
Mepo4g04066 441 SUPERFAMILY RING/U-box 224 288 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04066 21 440 C3H Transcription Factor Family AT1G22670 47.454 9.12e-114 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g04066 K15692 - gmx:100791248 650.588