Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g04043 ATGAATCCAACTGGGAGTCTGTGTGCTAACAACTGGGCTAGGTCCTCTTCCTTGGCTCCCACTGGGAATGGGTTACAAACGAATTTACCCTCAGGTCCTTCTCCTTTTTACAGGGTGGGAATTGAAACACCTTTCAAAGAAATCAACCAACCATCTCGAACCCAGTCTGTAATTCCGGGTGAATCTAACGTTGATATTAAGATCACTGATCAGGAAACAAGTAAACTTCAAGATTGGGATTCTAGTGTGATGTTGAATAAGCTTTCGTTTTTGGAAGATAAGATTCATCAGCTCCAGGATCTAGTGCATTTGATTGATACCAAGAAGTGTCAACCTTTTGAACAACCTCGTGAACTTGTGACCCAAGAACAACAACTCATCACAGCTGATTTAACATCAATTATTGTTCAGTTGATCTCTACTGCAGGGAGTCTTCTCCCTTCTGTTAGGAACACCGTTACAAACACAAGTCCATTGCTTGGACAACTTAGCCAGCTTCAAGGGATTAGCCTTCCTTTTGGAACAGGCACAAGTTGTGGTATTCAGCCACAAAATAATAGTGCAAATACATTTTTCGATCAGTCCATTCAGAAGGATGTACCTAATAATTGTGAAATGGTGCAAAACAATACTGTGGAAGAACATGAACATAAAGACGAAGAAGATATGGAAGAGGGAGAGAATCTTGCTCCTGGTTCATATGAGATTTTACAACTAGAAAAAGAAGAAATCCTTGCACCTCACACACATTTCTGTACTATCTGTGGCAAGGGTTTCAAGAGGGATGCAAATCTTCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACTCCAGCAGCCCTTGCAAAACCACACAAAGAAACTGGGTCTGAACCAAAGCTTATCAAGAGGTATTCGTGTCCCTATGGTGGCTGCAAGCGTAACAAGGATCACAAGAAATTTCAGCCTCTGAAGACTATTTTATGTGTCAAAAACCACTACAAAAGAACACACTGTGATAAGAGTTACACTTGCAGCAGATGCCACACGAAGAAGTTTTCAGTCATGGCAGATCTCAAAACTCATGAGAAACACTGTGGCAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTCGGACACATTGCTCTTTTCCAAGGCCATACACCGGCTATTCCTTCGGAAGACCACAAAGGATCTGCCGAGCCACCTGATCGATGTGACACCAGAGAAAACGGTGCTGTGGTAGGAAGCATGAACTTCTGTTTTGGATCAAATCCTTCAAGTGAAAATGGAGCTGATAGCATTATGGATGTGAAAGGTAATATTGATGATCCTATCAATTATTTCTCACCTTTGAACTTTGACGGCTGTAACTTTGGTGGGTTTAATGAATTCCCCCAACCTCCATTTGAAGATTCAGAAGGCTCTTTCTCTTTTCTCATGTCGGGTTCGTTTAATTATGCTCCTAAATCTGGTGGTGAATCATGTTCTGACAATCTGTAA 1509 0.4155 MNPTGSLCANNWARSSSLAPTGNGLQTNLPSGPSPFYRVGIETPFKEINQPSRTQSVIPGESNVDIKITDQETSKLQDWDSSVMLNKLSFLEDKIHQLQDLVHLIDTKKCQPFEQPRELVTQEQQLITADLTSIIVQLISTAGSLLPSVRNTVTNTSPLLGQLSQLQGISLPFGTGTSCGIQPQNNSANTFFDQSIQKDVPNNCEMVQNNTVEEHEHKDEEDMEEGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYGGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPSEDHKGSAEPPDRCDTRENGAVVGSMNFCFGSNPSSENGADSIMDVKGNIDDPINYFSPLNFDGCNFGGFNEFPQPPFEDSEGSFSFLMSGSFNYAPKSGGESCSDNL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g04043 502 ProSitePatterns Zinc finger C2H2 type domain signature. 252 272 IPR013087 -
Mepo4g04043 502 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 67 475 IPR044300 GO:0010044|GO:0010447
Mepo4g04043 502 Gene3D Classic Zinc Finger 234 303 - -
Mepo4g04043 502 SMART c2h2final6 337 359 IPR013087 -
Mepo4g04043 502 SMART c2h2final6 250 272 IPR013087 -
Mepo4g04043 502 SMART c2h2final6 299 332 IPR013087 -
Mepo4g04043 502 SUPERFAMILY beta-beta-alpha zinc fingers 248 275 IPR036236 -
Mepo4g04043 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 277 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g04043 Mepo-Chr4 50020927 50023719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g04043 218 500 C2H2 Transcription Factor Family AT1G34370 71.528 6.34e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g04043 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g04043 4 50020927 50023719 Mepo4g04043 4 50020927 50023719 ECH