Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03992 ATGACTACCACGGCGGAATCAGAACTAAAAATATACTGGTGCCATGAATGTGACATGAGCGTGTCTCTCATTTCTTCTCTTCTACTATGTCCCCATTGTCACACCAACTCCCTTGAACCCATGGACTCTCCTTTTCCCCAAAACAACGTGGAAATGCTTCTCCATTCTTCCCGCTTCAACGATTTTTTTGAAGAAGCCCTTTCACTATTCTCACCCCCTCCCCCCAAAACTCACACCGAAACAATCACCCCTACAATAATCGTCACCCCATCACTCCTCTCTGGCGTTGTTTTATGCGCCGTTTGTACTGAAGAAATTTCCGTTGATGAAGAAGCCAAACAGCTACCATGCAATCATCTCTACCACTCAGGTTGCATTATTCCGTGGCTCCATCGCCGATCTTCTTGCCCTATGTGCCGCTTCCAAATCAACGACAATGACGTAGATGACAAAGAAGATGAAGATGTTGATGTTGTTGCTGTCATGAGGCGGATGGTGCCGCGACTGTCGGAGCTGTCGGAGGATGATGGTTTCTATGGACTGAGAATTACTATCAACAACGTTGCTTCCCGTCGTCACGATCTCCATGCTTCCGTCACCGGCGAGAATTCTGCTACAGATAGTGAACCCGATGATGGTGGTGTAATTGGAGAATATTGA 660 0.4697 MTTTAESELKIYWCHECDMSVSLISSLLLCPHCHTNSLEPMDSPFPQNNVEMLLHSSRFNDFFEEALSLFSPPPPKTHTETITPTIIVTPSLLSGVVLCAVCTEEISVDEEAKQLPCNHLYHSGCIIPWLHRRSSCPMCRFQINDNDVDDKEDEDVDVVAVMRRMVPRLSELSEDDGFYGLRITINNVASRRHDLHASVTGENSATDSEPDDGGVIGEY 219
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03992 219 ProSiteProfiles Zinc finger RING-type profile. 99 140 IPR001841 -
Mepo4g03992 219 SMART ring_2 99 139 IPR001841 -
Mepo4g03992 219 SUPERFAMILY RING/U-box 92 145 - -
Mepo4g03992 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 58 143 - -
Mepo4g03992 219 CDD RING-H2_PA-TM-RING 99 140 - -
Mepo4g03992 219 Pfam Ring finger domain 99 140 IPR001841 -
Mepo4g03992 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 158 IPR013083 -
Mepo4g03992 219 Pfam zinc-ribbon 12 36 IPR039525 GO:0061630
Mepo4g03992 219 MobiDBLite consensus disorder prediction 196 219 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mepo4g03992 Mepo-Chr4 49478225 49478884 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03992 3 157 C3H Transcription Factor Family AT1G68180 29.947 1.62e-18 79.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03992 K11982 - gmx:100775530 169.474