Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03988 ATGGCTGGAACAATGAACGAGATTGATTGCTTCAACTTATTTGACAACATTGATGACATTTACCCCGTCGACGACGTTGACACCGCAGCCGCTTCATTGCCCTCCTCCGTGGCAAACTACAACTCATTGGCGAGTATCTGGCCGAATGAGTCTGACTCGGTGTTTTCTGGCAATAGTACTTCAGACCTCTCGGCGGAGCTCCCCGTTGATCCGTTCGAAGATCTTCTTTCATTGGAGTGGGTGTCCAATATTGTGGACGATTCATTTTGTGAGGAGAGTCTCACAATGAAAGTGGAGCAGCAGCCATCATCATCAGCTGTCAGCAAGGAGGACTCTGGGCATTATCAATTTCAGACACCAAGTCCTATATCTGTCCTTGAAAGCAGTAGTTCCTGCTCTGGTGGAAAGACCACAGGGATTTACGTCCCCATCCCCGTGCCTTGCGGACGTGCACGCACCAAGCGTCCACGCCCCACAGCCTTCAACCCTCGTTCTGCCATGAACCTCATTTCCCCTACTTCCTCTTCTGTTGAGGAGAACATGCAACCTAATGTTTTCTCCACCAAGGCGCTGTCTTCAGATTTTGAAAATTTTGCTGAGTCCCGGATTTTTGTCAAGAAACCAAAGCTCTCTTCTGGAGAGACCAAGAAGAAAAAGAAAGTCAAGGCGCCACTTCCTACTGCTCCAACTGACGTTGGCGAACAGAATGGTTCACTACCTGTTAGGAAATGCATGCATTGTGAGATAACCAAGACTCCACAATGGAGAGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCTTGCGGTGTTCGGTACAAGTCTGGCCGACTTTTCCCTGAATACCGGCCTGCTGCTAGTCCGACGTTTTGTCCATCTGTGCACTCCAATTCGCACAAAAAGGTCCTTGAAATGAGATGCAAGGATAGTTTTGAATCAGATTCAGCTGAACTCATTCCAAACACCAATATTCTCGCCTTGGAATACAATATTTGA 996 0.4809 MAGTMNEIDCFNLFDNIDDIYPVDDVDTAAASLPSSVANYNSLASIWPNESDSVFSGNSTSDLSAELPVDPFEDLLSLEWVSNIVDDSFCEESLTMKVEQQPSSSAVSKEDSGHYQFQTPSPISVLESSSSCSGGKTTGIYVPIPVPCGRARTKRPRPTAFNPRSAMNLISPTSSSVEENMQPNVFSTKALSSDFENFAESRIFVKKPKLSSGETKKKKKVKAPLPTAPTDVGEQNGSLPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRCKDSFESDSAELIPNTNILALEYNI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03988 331 FunFam GATA transcription factor 234 318 - -
Mepo4g03988 331 CDD ZnF_GATA 243 300 IPR000679 GO:0006355|GO:0043565
Mepo4g03988 331 Gene3D - 241 288 IPR013088 GO:0006355|GO:0008270
Mepo4g03988 331 ProSiteProfiles GATA-type zinc finger domain profile. 238 274 IPR000679 GO:0006355|GO:0043565
Mepo4g03988 331 PIRSF Txn_fac_GATA_plant 1 327 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mepo4g03988 331 SMART GATA_3 238 288 IPR000679 GO:0006355|GO:0043565
Mepo4g03988 331 PANTHER GATA TRANSCRIPTION FACTOR 43 310 - -
Mepo4g03988 331 MobiDBLite consensus disorder prediction 149 169 - -
Mepo4g03988 331 Pfam GATA zinc finger 244 277 IPR000679 GO:0006355|GO:0043565
Mepo4g03988 331 ProSitePatterns GATA-type zinc finger domain. 244 269 IPR000679 GO:0006355|GO:0043565
Mepo4g03988 331 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 242 301 - -
Mepo4g03988 331 MobiDBLite consensus disorder prediction 211 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03988 Mepo-Chr4 49402770 49406943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03988 85 318 C2C2-Gata Transcription Factor Family AT1G08010 39.831 8.74e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo4g03988 GATA 5.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03988 - - gmx:100815693 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03988 4 49402770 49406943 Mepo4g03988 4 49402770 49406943 ECH