Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03980 ATGGAGTTTTCAAATGGAGATCATAGCAATGGTTGTAACGGTTCTTCCATGAATCTTTGCAATGGTGGAACAAAAACTAGTAACAACAATGACCCTTTGAATTGGGGTATGGCTGCAGATTCTATGAAGGGTAGTCACCTAGATGAGGTGAAACGTATGGTAGAGGAATACCGGAAACCGGTTGTGCCCTTAGGTGGAAAAGGTTTAACAATATCACAAGTGGCTGCGGTTGCAACACATAGTACCGGCGTGGCGGTTGAACTGGCGGAAGAGGCACGCTCCGCCGTTAAAGCTAGTAGTGATTGGGTGGTTGATAGTATGAATAAAGGGACTGATAGCTATGGAGTGACCACCGGGTTTGGTGCAACCTCACACAGAAGAACAAAACAAGGTGGTGCCCTTCAAAGTGAACTCATCAGATTTCTGAATGCTGGAATTTTCGGCAATGGAACAGAAGCATCTCAGACATTACCTCACACAGCCACAAGAGCAGGCATGTTGGTTAGAATCAACACATTGCTTCAAGGATATTCAGGAATCAGATTTGAAATTATGGAAGCCATAGCAAAATTTCTGAACCATAACATAACACCATGTCTTCCATTAAGAGGTACAATCACTGCATCAGGTGATTTAGTTCCTTTATCATATGTTGCTGGCCTTTTAATTGGAAGACCAAATTCAAAATCTATTGGACCTAATGGACAAGTTCTGAATGCTAAAGAGGCATTTCAACTAGCTGGAATTGAAACTGGTTTCTTTGAGTTGCAACCTAAAGAAGGTTTAGCACTAGTGAATGGCACTGCAGTTGGATCAGGTTTGGCTTCATTGGTTCTTTTTGACACAAATTTACTAGTTGTTCTCTCGGAACTTTTGTCTGCGATTTTCGCGGAAGTTATGCAAGGAAAACCCGAATTCACTGACCATTTGACTCATAAGTTGAAACATCATCCTGGTCAAATTGAGGCTGCTGCTATTATGGAACATATTTTAGATGGAAGTTACTATGTTAAGGCTGCACAAAAAGTACATGAGATTGATCCACTTCAGAAGCCTAAACAAGATAGATACGCGCTTCGAACATCACCTCAGTGGCTTGGACCGCAGATTGAAGTGATTCGACACGCAACAAAGATGATTGAGAGGGAGATAAATTCAGTGAATGACAATCCACTTATTGATGTTTCAAGGAATAAGGCACTTCATGGAGGAAATTTCCAAGGTACACCGATTGGTGTATCGATGGATAACACTCGTTTAGCCATTGCTTCCATTGGTAAACTTATGTTTGCTCAATTCTCTGAGCTTGTGAATGACTTCTATAACAACGGATTGCCTTCGAATCTAACTGCTAGCCGCAACCCGAGTTTGGATTACGGCTTCAAAGGAGCAGAAATTGCAATGGCCTCTTATTGTTCAGAACTTCAATACCTTGCTAATCCTGTCACCACTCATGTTCAAAGTGCTGAACAACATAACCAAGATGTTAACTCTTTAGGCTTGATTTCATCAAGAAAAACAGCTGAATCAGTTGAAATATTGAAGCTCATGTCCTCCACTTTCTTAGTTGCATTATGCCAAGCCATTGATCTAAGGCACATTGAGGAAAACTTGAAAAGTGTTGTCAAGAACACTGTGAGTCAAGTAGCCAAGAGAATTCTCACAGTTGGTGTCAATGGTGAGTTGCATCCATCAAGGTTTTGTGAGAAGGATTTGCTCAATGTTGTTGAACGTGAGTATGTTTTCGCTTACATTGACGACCCTTGCAGTGCTACATACCCTCTAATGCAGAAGCTGAGACATGTACTAGTTGATCATGCATTGCAAAATGGTGATAAGGAGGCAAATTCAAGCACCTCAATTTTCCAAAAGATTGGAGCTTTTGAGGAAGAGCTTAAGACCCTTTTGCCTAAAGAGGTGGAAAATGCTAGGGTTGAAGTTGAAAATGGAAACCCTGCAGTTCCTAATAGGATCAAGGAATGTAGATCATATCCATTGTACAAGTTCATGAGAGAAACTTTAGGGACAAGTTTGCTGACAGGTGAGAAAATTAGGTCACCTGGTGAGGAATGTGATAAGGTTTTCACAGCATTGTGTGATGGAAGGTTTATTGATCCCATGTTGGATTGTCTAAAGGAGTGGAATGGTGCTCCTCTACCTATCTGCTAG 2169 0.4126 MEFSNGDHSNGCNGSSMNLCNGGTKTSNNNDPLNWGMAADSMKGSHLDEVKRMVEEYRKPVVPLGGKGLTISQVAAVATHSTGVAVELAEEARSAVKASSDWVVDSMNKGTDSYGVTTGFGATSHRRTKQGGALQSELIRFLNAGIFGNGTEASQTLPHTATRAGMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQVLNAKEAFQLAGIETGFFELQPKEGLALVNGTAVGSGLASLVLFDTNLLVVLSELLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSYYVKAAQKVHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAESVEILKLMSSTFLVALCQAIDLRHIEENLKSVVKNTVSQVAKRILTVGVNGELHPSRFCEKDLLNVVEREYVFAYIDDPCSATYPLMQKLRHVLVDHALQNGDKEANSSTSIFQKIGAFEEELKTLLPKEVENARVEVENGNPAVPNRIKECRSYPLYKFMRETLGTSLLTGEKIRSPGEECDKVFTALCDGRFIDPMLDCLKEWNGAPLPIC 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03980 722 Gene3D - 535 656 IPR023144 -
Mepo4g03980 722 FunFam Phenylalanine ammonia-lyase 535 656 - -
Mepo4g03980 722 CDD PAL-HAL 67 532 IPR001106 -
Mepo4g03980 722 SUPERFAMILY L-aspartase-like 31 722 IPR008948 GO:0003824
Mepo4g03980 722 Gene3D Fumarase/aspartase (Central domain) 269 717 - -
Mepo4g03980 722 FunFam Phenylalanine ammonia-lyase 22 268 - -
Mepo4g03980 722 PANTHER HISTIDINE AMMONIA-LYASE 29 722 IPR001106 -
Mepo4g03980 722 Pfam Aromatic amino acid lyase 69 543 IPR001106 -
Mepo4g03980 722 NCBIfam phenylalanine ammonia-lyase 31 712 IPR005922 GO:0005737|GO:0006559|GO:0016841
Mepo4g03980 722 Gene3D - 22 268 IPR024083 -
Mepo4g03980 722 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 204 220 IPR022313 GO:0016841
Mepo4g03980 722 FunFam Phenylalanine ammonia-lyase 269 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03980 Mepo-Chr4 49289991 49296471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03980 5 722 Monolignol Biosynthesis Gene Families AT2G37040 79.917 0.0 1223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03980 K10775 - gmx:100801470 1283.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03341 3 43467163 43470078 Mepo4g03980 4 49289991 49296471 ECH
Mepo4g03980 4 49289991 49296471 Mepo3g03341 3 43467163 43470078 ECH
Mepo4g03980 4 49289991 49296471 Mepo4g03980 4 49289991 49296471 ECH
Mepo3g03342 3 43474145 43476317 Mepo4g03980 4 49289991 49296471 PCT