Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03920 ATGGGTCACTCCAACGTTTGGAACTCTCACCCCAAGACCTATGGTCCTGGTTCTCGCACATGCCGTGTGTGTGGAAACTCTCATGGATTGATTAGGAAGTACGGACTCATGTGTTGCAGGCAGTGCTTCCACAGCAATGCCAAGGAAATTGGCTTCATTAAGGAAGGTGGTTTATCGGAAGAAGATTACGACTTAATCCATGGCTCTCAATCTGGTTGGGTCGATGCTCGAACTTCGTGTCATCATCTCCATTCCTTATCAAATGATCTTACCCACATTCCAACGCCTAACACTCCCTGCGACAGGTGCCAACACCCGAGTGAAAACTGGTTGTGTTTGTCGTGCAAGGACGTGCTTTGTGGCCGTTTTGTGAACAGGCATATGCTCCAGCATTTTCGTGAAACTAATCATAGTGTGGCCCTCAGTTTCAGTGATCTGTCAGTATGGTGCTTCTCCTGTGATGCTTATTTGGATGCTCAAGTTATTCAGCAATTGCGACCTGTTCATGAAGTGGCCTATATATTGAAATTCGATGAACCTCCACCAGTTGGAGCAAGCTGA 561 0.4688 MGHSNVWNSHPKTYGPGSRTCRVCGNSHGLIRKYGLMCCRQCFHSNAKEIGFIKEGGLSEEDYDLIHGSQSGWVDARTSCHHLHSLSNDLTHIPTPNTPCDRCQHPSENWLCLSCKDVLCGRFVNRHMLQHFRETNHSVALSFSDLSVWCFSCDAYLDAQVIQQLRPVHEVAYILKFDEPPPVGAS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03920 186 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 59 184 - -
Mepo4g03920 186 Gene3D 30s Ribosomal Protein S14; Chain N 1 55 IPR043140 -
Mepo4g03920 186 ProSiteProfiles Zinc finger UBP-type profile. 78 179 IPR001607 GO:0008270
Mepo4g03920 186 SUPERFAMILY RING/U-box 78 170 - -
Mepo4g03920 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 180 IPR013083 -
Mepo4g03920 186 SMART Zf_UBP_1 99 148 IPR001607 GO:0008270
Mepo4g03920 186 Pfam Zn-finger in ubiquitin-hydrolases and other protein 100 158 IPR001607 GO:0008270
Mepo4g03920 186 FunFam 40S ribosomal protein S29 1 55 - -
Mepo4g03920 186 Pfam Ribosomal protein S14p/S29e 7 54 IPR001209 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03920 Mepo-Chr4 48590689 48595516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03920 1 54 Cytoplasmic Ribosomal Protein Gene Family AT4G33865 92.593 6.94e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03920 - - aprc:113869857 233.802