Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03885 ATGATTTCAACTGGGATTAACTTGGTGATGACTGTGATTGGTTTTGCTGTTAGCACAATGTTCATTGTTTTCGTATGCACAAGACTCATTTGTGCAAGAATTCACATGAATGCCAATAGAAGAAGATCCTTTCTCATTGCTTCTAGATCCAATCTCAGCTTGATGGAACGTGGTTGTCAAGGTCTTGAACGCGTTGATGTAGCTAAATTTCCAGTTAAGAAGTACAGTGACAAGTTTTTTGCAGCTGAAGAAAATTCTCAATGCACAGTCTGTCTCTCAGAGTACCAAGATGAAGATACACTGCGTATCCTCCCCCATTGCGGACACTCCTTCCATATGGCCTGCATAGACTTATGGCTGCAGCAGAATGCCACTTGTCCTGTTTGCCGAGTATCATTGCGTGAATTTTCTGAGACAACGCGATCAATGCAACCTGTATATAGCTCCCATTATGGGATGGAGTCCTTTGACACTCATCATTATCACTGTATAATGGCCGATAATGGATTATTGACAAGAACCCCTGATAACCGTGGGGCAAACCCTATTCAAGAGGATCAGTTTCCATCTGAGGGTGGTGGAGCAGTTGATATGGACAGTATCACCTCCTTAAGTCAGGGTGATTTCATTAAAGACGAAGAGAAGAAGCATGTAGAGAGCCCATCAAATTTATAG 675 0.4237 MISTGINLVMTVIGFAVSTMFIVFVCTRLICARIHMNANRRRSFLIASRSNLSLMERGCQGLERVDVAKFPVKKYSDKFFAAEENSQCTVCLSEYQDEDTLRILPHCGHSFHMACIDLWLQQNATCPVCRVSLREFSETTRSMQPVYSSHYGMESFDTHHYHCIMADNGLLTRTPDNRGANPIQEDQFPSEGGGAVDMDSITSLSQGDFIKDEEKKHVESPSNL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03885 224 SUPERFAMILY RING/U-box 82 136 - -
Mepo4g03885 224 FunFam E3 ubiquitin-protein ligase ATL6 50 136 - -
Mepo4g03885 224 SMART ring_2 88 129 IPR001841 -
Mepo4g03885 224 MobiDBLite consensus disorder prediction 175 200 - -
Mepo4g03885 224 CDD RING-H2_EL5-like 87 130 - -
Mepo4g03885 224 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Mepo4g03885 224 Pfam Ring finger domain 87 130 IPR001841 -
Mepo4g03885 224 PANTHER OS11G0150450 PROTEIN 1 185 - -
Mepo4g03885 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 135 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03885 Mepo-Chr4 48235593 48238550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03885 21 133 C3H Transcription Factor Family AT4G10150 39.167 3.71e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03885 - - gmx:100794979 379.407