Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03857 ATGGAAGAAACTCACGACAACGATGCTCCTCCAAACAACAAGCCTTCCACCGAACAGGACATAGCTGATGAGTTAGAGCTTAGGTCAAAGAAGTATCTCAGAGGAGAAGCTGCTAATTTAAAGGGTTTAAAAGATAAAAAGCTCAAGAGTCAGATAATTGATAGGGAGAAATTATATGGACAATCTGCTAAAGCTGCTGCTCAGGCTGAGAAGTGGATTATGCCCAGCGAAGGAGGTTATATAGAGGCCGAAGGCATAGAAAAGACGTATAGGATTAAGCAGGAGACAATAGCCAAGGAAGTAGATATCTCAAGCTCAAGGAACCAATATGATATTACTTTACCAGAGCTTGGTCCATATACAATAGACTTTACTTCAAGTGGCCGGTATATGGCTGTTGGTGGTCGTAAGGGCCACCTAGCAATTATGGACATGATGAATCTGAGCCTGATCAGGGAGCTTCAGGTAAGAGAAACTGTGCGTGATGTGGTATTCTTACATAATGAGCTCTTCTTTGCTGCTGCCCAGAGAAAGTATCCATACATATATAATCGGGACGGCACAGAGCTTCATTGCCTAAAGGAGCATGGTTCAGTGTTGAGGCTTCAGTTTCTGGAAAACCATTTTCTTCTGGCTTCTACCAACAAATTTGGGATGCTTCTTTATCAGGATGTTACAATGGGTACAATAGCTGGAAAATATCGAACTGGTTTAGGACGCACAAATGTGATGGAATTAAACCCTTACAATGGGGTTATTTCTTTAGGCCACTCAGCCGGTACAGTTACTATGTGGAAGCCAACCAGTTCGTCTCCCCTTGTCAAGATGCTATGTCATCAAGGGCCAGTCTCGGCTCTGGCATTTCACTCAAATGGCCACTTAATGGCTACTGCTGGGGTAGACAAAAAAATTAAGCTTTGGGACTTGAGGAAATTTGAGGCTTTTCAAACATTACCAGGCCATGCAAATACTTTGGAGTTTAGTCAAAAAGGCTTGCTTGCTTGTGGTAATGGTTCATATATCCAGGTTCTGAGGGATGTTTCTGGTGCACAGAACTATTCAAGGTACATGACTCATTCAATGGTTAAGGGATACCAGATAGGAAAATTAGCTTTTCGACCATACGAAGATGTTCTAGGCATAGGACATTCAATGGGTTTGTCTAGTATCCTTATTCCAGGAGCAGGAGAACCTAACTTTGATTCATGGGTTGCAAACCCATTTGAAACACCTAAACAGAGAAGAGAGAAGGAAATACGATCTCTTCTTGATAAGCTTCCACCTGAGACAATCATGCTGGATCCCAGCAAGATCGGTACGGTGAAATATTCTAAAACAGAGAAGCCAACTGCACAAGAAATAGAGGCCGAGATGGAAGCCGCTGTGGAAGCTGTCAAGGGCAAAAAACTGAAAAAGAAAACAAAAGGAAGAAGCAAGGCTGGTAAAATAATGCCGAAAAAGCAAGATGCAATTGCCAATGCAAAGAGGCCTTACTTGGAGCAGAAAATTCAAGAAGAGAAAAACCTAGCTAAAAAGAAACAAAAAACTAATGAGGGAGGTGAACTGCCGAAATCTTTACAGCGGTTTGTTCATAAGAAACCATCATCATAA 1611 0.4196 MEETHDNDAPPNNKPSTEQDIADELELRSKKYLRGEAANLKGLKDKKLKSQIIDREKLYGQSAKAAAQAEKWIMPSEGGYIEAEGIEKTYRIKQETIAKEVDISSSRNQYDITLPELGPYTIDFTSSGRYMAVGGRKGHLAIMDMMNLSLIRELQVRETVRDVVFLHNELFFAAAQRKYPYIYNRDGTELHCLKEHGSVLRLQFLENHFLLASTNKFGMLLYQDVTMGTIAGKYRTGLGRTNVMELNPYNGVISLGHSAGTVTMWKPTSSSPLVKMLCHQGPVSALAFHSNGHLMATAGVDKKIKLWDLRKFEAFQTLPGHANTLEFSQKGLLACGNGSYIQVLRDVSGAQNYSRYMTHSMVKGYQIGKLAFRPYEDVLGIGHSMGLSSILIPGAGEPNFDSWVANPFETPKQRREKEIRSLLDKLPPETIMLDPSKIGTVKYSKTEKPTAQEIEAEMEAAVEAVKGKKLKKKTKGRSKAGKIMPKKQDAIANAKRPYLEQKIQEEKNLAKKKQKTNEGGELPKSLQRFVHKKPSS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03857 536 Coils Coil 451 471 - -
Mepo4g03857 536 PANTHER WD-REPEAT PROTEIN BING4 9 530 IPR040315 -
Mepo4g03857 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Mepo4g03857 536 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Mepo4g03857 536 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Mepo4g03857 536 Pfam WD domain, G-beta repeat 278 308 IPR001680 GO:0005515
Mepo4g03857 536 SMART BING4CT_2 355 435 IPR012952 -
Mepo4g03857 536 Gene3D - 100 390 IPR015943 GO:0005515
Mepo4g03857 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Mepo4g03857 536 SUPERFAMILY WD40 repeat-like 111 383 IPR036322 GO:0005515
Mepo4g03857 536 SMART WD40_4 186 223 IPR001680 GO:0005515
Mepo4g03857 536 SMART WD40_4 269 308 IPR001680 GO:0005515
Mepo4g03857 536 SMART WD40_4 105 144 IPR001680 GO:0005515
Mepo4g03857 536 SMART WD40_4 147 184 IPR001680 GO:0005515
Mepo4g03857 536 MobiDBLite consensus disorder prediction 1 21 - -
Mepo4g03857 536 MobiDBLite consensus disorder prediction 470 536 - -
Mepo4g03857 536 FunFam U3 small nucleolar RNA-associated protein 7 108 390 - -
Mepo4g03857 536 MobiDBLite consensus disorder prediction 499 519 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03857 118 348 U-box Gene Family AT1G04510 24.898 1.28e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03857 K14768 - gmx:100802940 852.818