Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03838 ATGACAGATTTTGAATCACTACAGCAGAAGCCTGAATCTGCTGATGCTCATTCTGATTTTGACCATGGATTGGATGACTTTATGCGTGGTCATTTGGACGATTGTATGTCATTTGCTTCGTGTAGTTCTTCCCGGGTACAAGATGACGAGGATGATGAGAGTGATCAGTTGGTTCGGAGGAGACGGAGGTCTGATCTTGAAGGAGATGATTTAGCAGAGTCATCAGCTGCGCGGAGGCGCCATTCGCGAATTTTGAGCAGATGGGCTGCCCGACAGGCGCAGGAGATGATAACTACTATTGAGAGGAGGAATCGCGAGTCTGAGTTGATGGCGCTTGCGGGTTTACATACGGTGTCCATGTTGGATTCTTCTTTTTTGAGGGGGTCGCAGTCTCCTACTTCTGGTCAGGAGGGGGCTGTTGAGAGACCGAGCACTCAGGCATCTTCAATTCTGCAGATGTGGCGTGAATTGGAGGATGAACATATGTTGAATCGGGCACGTGAAAGGATGAGGGAAAGGTTGAGGCAGCAAAGAAGTTCTGATGCTAATACCAATGTGTCAAGTACCATGTCTGACAGCCGAGGAAGTGAGAATCGAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACCTGGTCACATGATCAGATTGGATCACGGAATGCACTTGGAAATCGTGATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCGTTCATCATCTAATGTGAGCCAAAGAAACACCAACCACAGATCAGAATGGCTTGGAGAAACAGAGCGGGAGAGGGTGAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAACAGCGAGGTTCACGTGGGAGCCGCAGGGATGCTCAAGTAAGTCAATCTGCTCCAGCTGATCGGACTCGTGATATTGCAGCTGACCATGATGAACGTCAACCAGAGCATGTTCGGCGGGACATGTTGAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTTAGGGTAGAAAGGGAAAGACAAAGAGAGCTTGAGGGTTTGTTGGAGCATCGAGCTGTTTCTGATTTTGCTCATCGCAATCGTATTCAGTCATTGCTCAGAGGTAGATTCCTCAGAAACGAAACTGTTGAAGATGAGAGGCCTCCTTCTACAGCTGCAAGTGAATTAGTTCAGTTAAGACAACGGCACACAGTCTCTGGTATAAGGGAGGGGTTTCGCTCAAGATTAGAGAATATTGTCCGTGGTCAATCAAGCACCAATCCTGATGCCACATCAAATAATAACATTGATGAAACAAGACATGATGAGAACCAATCAAACAATCTCATAGATGCCCAACAAGAAAATTATGACCAAGAGCAGATTAGGAGCCTGGAAACTGATGCACGTCAGTCTAATCAAACAGGAATTTCGGAGAGTAGCACAAGTGAACCTATTAATTGGCAAGAAGCTAGTAATCAAGGAGGGAATTGGCAGGAACAAATTACCGAAAATGGGGGAGGAAACTGGCCGCAGAGAATTAATCATCTCAGAGATGGAAGGGAAGCCAGTGATTGGCCACAAGAAACTCCCAGAAATTCAGCTGGGGATGATCCTCATCCACAGGAAGCTCAGAGAATTTGGCAGGACGATAACACAAGGGAAGCTGTTGGTAATTGGTCTGAAGGACCTTCCGCAGCTTCAAGGAATCGCCGTAGTGTTCCTTTTAGAAGGTTCAATAGATTTCATCCTCCTGACGATGATAATGTATACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTATCTAACCTTCTTCGGAGTGGTTTCCGTGAAAGTCTGGATCAACTAATACAGTCATATGTTGAAAGGCAAGGTCATGCACCAATTGACTGGGATTTGCATCGAAACTTGCCTACACCGACTCCTGCCTCACCAGAACGAGACCCTGATCAGCAGGGTGATGAACGTAATGAGGGACAGCATGAAGCCATCAACAGATCTTCACCGGTGTTGCCTTCTCCACCAGTGCCCCCGCCACAACCACTTTGGCACCAAGATTTGCATCAAACTGGATGGTCTCGTCATACCATGCACCGCTCTGAAATTGAATGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAATTGCAGAGATCTGTCAGACAGGAGGTCTCTGCAGCTCTCAACCGCTCAGCTGGTGAAAATGGATTGGCTGCTGGGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTATGTTGTGATAACCACATTGATTCGCTTTTGTACAGATGTGGACACATGTGCACATGTTCAAAATGTGCCAGTGAGTTAATTCGTGGAGGAGGCAAGTGTCCTTTATGCCGAGCGCCAATTGTTGAGATGGTCAGAGCATATTCCATATTGTAA 2544 0.467 MTDFESLQQKPESADAHSDFDHGLDDFMRGHLDDCMSFASCSSSRVQDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASSILQMWRELEDEHMLNRARERMRERLRQQRSSDANTNVSSTMSDSRGSENRGSLGDASESENDYGTWSHDQIGSRNALGNRDGSSREQSPDLGEVERERVRQIVRGWMESGISDRSSSNVSQRNTNHRSEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQVSQSAPADRTRDIAADHDERQPEHVRRDMLRLRGRQALVDLLVRVERERQRELEGLLEHRAVSDFAHRNRIQSLLRGRFLRNETVEDERPPSTAASELVQLRQRHTVSGIREGFRSRLENIVRGQSSTNPDATSNNNIDETRHDENQSNNLIDAQQENYDQEQIRSLETDARQSNQTGISESSTSEPINWQEASNQGGNWQEQITENGGGNWPQRINHLRDGREASDWPQETPRNSAGDDPHPQEAQRIWQDDNTREAVGNWSEGPSAASRNRRSVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGHAPIDWDLHRNLPTPTPASPERDPDQQGDERNEGQHEAINRSSPVLPSPPVPPPQPLWHQDLHQTGWSRHTMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLAAGTSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCASELIRGGGKCPLCRAPIVEMVRAYSIL 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03838 847 MobiDBLite consensus disorder prediction 665 679 - -
Mepo4g03838 847 MobiDBLite consensus disorder prediction 432 461 - -
Mepo4g03838 847 MobiDBLite consensus disorder prediction 482 524 - -
Mepo4g03838 847 MobiDBLite consensus disorder prediction 482 557 - -
Mepo4g03838 847 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 781 845 IPR013083 -
Mepo4g03838 847 MobiDBLite consensus disorder prediction 297 319 - -
Mepo4g03838 847 MobiDBLite consensus disorder prediction 432 448 - -
Mepo4g03838 847 SUPERFAMILY RING/U-box 794 840 - -
Mepo4g03838 847 Coils Coil 724 744 - -
Mepo4g03838 847 MobiDBLite consensus disorder prediction 297 336 - -
Mepo4g03838 847 Pfam Zinc finger, C3HC4 type (RING finger) 792 838 - -
Mepo4g03838 847 MobiDBLite consensus disorder prediction 172 245 - -
Mepo4g03838 847 MobiDBLite consensus disorder prediction 125 147 - -
Mepo4g03838 847 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 847 - -
Mepo4g03838 847 MobiDBLite consensus disorder prediction 41 78 - -
Mepo4g03838 847 MobiDBLite consensus disorder prediction 179 234 - -
Mepo4g03838 847 MobiDBLite consensus disorder prediction 52 78 - -
Mepo4g03838 847 MobiDBLite consensus disorder prediction 322 336 - -
Mepo4g03838 847 MobiDBLite consensus disorder prediction 648 703 - -
Mepo4g03838 847 ProSiteProfiles Zinc finger RING-type profile. 795 834 IPR001841 -
Mepo4g03838 847 CDD mRING-HC-C3HC5_NEU1 792 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03838 Mepo-Chr4 47666832 47673039 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03838 775 841 C3H Transcription Factor Family AT3G06140 39.706 2.15e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03838 - - gmx:100805607 1392.48