Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03835 ATGAGACAGAAGGTGAAACTTGCCTTTATCTCCAATGGTGTGGCGAGGAAGGCAACCTACAACAAACGAAAGAAGGGTATCATAAAGAAGGTGGGCGAACTCACAACTCTTTGTGGTGTTTCTGCGTGTGCTATTATTTCAAATCCTTTCAATTCTCAAACAGAGGTCTGGCCAGACCGAGAGGGAGCAAAGAAGGTAATTGAGAGGTATCAAAATTCATCTGTTAAAGATGAAACCAAGAATTTGAACCAAGAGGGGTTAATCATGCAAAATATTGCTAAAGCTAAGGAACGACTAAGAAAGTTGGAAACCAAGAATCATGGGAAAAAGCTAAACCGTCTTATGTATGAGTGCATGCAAAACAAAAATTTGTTGAACAACCTCACTGCTGAAGAACTGAAAGATTTGGATGAGTTTGTTGAGAATAAGTTGAAAGAGGAAGATAAAAAGATAGATGCAGTTGAAACATGA 471 0.3864 MRQKVKLAFISNGVARKATYNKRKKGIIKKVGELTTLCGVSACAIISNPFNSQTEVWPDREGAKKVIERYQNSSVKDETKNLNQEGLIMQNIAKAKERLRKLETKNHGKKLNRLMYECMQNKNLLNNLTAEELKDLDEFVENKLKEEDKKIDAVET 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03835 156 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Mepo4g03835 156 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Mepo4g03835 156 ProSiteProfiles MADS-box domain profile. 1 46 IPR002100 GO:0003677|GO:0046983
Mepo4g03835 156 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Mepo4g03835 156 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Mepo4g03835 156 CDD MADS_SRF_like 1 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo4g03835 156 Coils Coil 92 112 - -
Mepo4g03835 156 Coils Coil 130 150 - -
Mepo4g03835 156 PANTHER MADS BOX PROTEIN 2 150 - -
Mepo4g03835 156 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Mepo4g03835 156 FunFam Agamous-like MADS-box protein AGL80 12 96 - -
Mepo4g03835 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03835 Mepo-Chr4 47643758 47644252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03835 1 154 Type I MADS-box Gene Family AT1G65300 43.226 3.02e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo4g03835 SRF-TF 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03835 - - gmx:100792290 172.555