Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03824 ATGGAAGAAACCGCTTTTTACCAAGGTCCTGGATTCCGATTCCACCCTACCGATGAAGAAATCGTTCGTTACTACCTTAAGAAAAAACTCACCGGAAATTTACCTTCTTGCTTTGATTATCTCGCTGTCATCGACATCTACAAATTCGAGCCATGGGACCTTCCCAGTTTGTCGAAGCTGAAGACAAGGGATTTGGAATGGTACTTCTTCACTGCGTTGGACAAGAAGTATGGTAACAGTAGCAGGACGAATCGTGCTACTGATAGAGGTTACTGGAAGACTACTGGCAAGGATCGTGCTATCAAGAATGGGGAAGAGACTGTTGGAATGAAGAAGACACTTGTTTATCACTTGGGTCGGGCTCCGCATGGTGATCGAAGCAATTGGGTCATGCATGAGTATAGGATGATTGATGAGACTTTAGCCAAAGCTGGAGTGCAGGATACTTATGTCCTGTGTAGGATCTTCGAGAAGAGTGGCTCGGGGCCTAAGAATGGGGAGAAGTACGGGGCTCCCTTTGTTGAGGAGGAATGGGAGAGTTTTGGTGAACAAGTGCTACCCTTGCCGCCTGTTGATAATGAACCTTTGAAACTAGAAGGGTTTGCTTCTGATGTTGATGAACTCGTGAATCCCTTGGCAGTTTCTGTACCTGACGATGTACTGGTGGATCCCTTGGATGTTTTTTATGACGAGCTTTGGAAAGAAAATCTGCCTGATTCTACTTATGAGGACTTTTTTGAAACCCATGACCTCGACCAGGATCTTGATGCTAGTAACACAGTTGGAAGTGCTGAACTTCAATCCAACTTCTGTTATGGAGAGTGTAGTACCCATCCTCAGTATTCCCAAGCATTTATTAATGAACGTAAGCAATTGGAAGCCACTCTTGGCATGTATGAACATGAGGTTGATCAGCCTAATAATATAGCTGATCTATATGGTGGGAATATCAATTCAGTGCAAGATGGATACAATGGTGGGACAAACCATAAGGAAAATCCTTTGAATTTCAATTTTACATCAGAGGAACTGGATAAATTCTTTGATGCCCCTGATTATCTTACTGGTGTGACTGATGAGTACATGGAAACCAATGATATTAAGAATCGTGACGAGTTTGCTCCCACTGAGATCGATCCTTCTGTTGCTGCAATGCTAGACGAGTACCTTGTATGCCCTGATGATGACGTTTCTAAATATATATGCTTTGATTCTCCTTTGAATGCAAGGAGTGAAAGCCCCATTGCCAGCTATGGACAGACTATCATTGAGCAGAATGTGGAGGGCGAAACCTATGGTAGTTCCTTGACAAACAAACATGTTTTTGAAGCACAATCTTGTCATGAAGATTTACCAAAGGAGGATCTAGCAGCGCCAAACTGGGTCTCAGGAGATGCAAACACTTTTGTGAAGCATGCCAATAGGTTGTTGGCCAACATACCTGCTCCACCTGCATTTGCATCAGAGTTTCCTGCTAAGGAGTTGGCTTGTGGGACACACCCTGCAGCTGAGTCATCCAATTCAGCTCATATAACTGCAGGTATGATCAGCATTACAGACATTACTTTTAGAGGCAATGCAATGGATTGGATGGTGGGCAAGAATGGAGGTTTTAACACCGTTATGTCTACTGGGTTTTCCCAAACTGATGTTAACTCTGCTACTTTGGTGCCTATTTCTGGCTTGGTCTGTAGCAAAACTGCATTTATGTTATCACATGGTTGGGTTTTCTTGATGGGTTTCTCAGTTGTGATTCTTTCACTGAGTTTCAAGATCGGAAGCTTCATGTATACGGGTAAATGA 1803 0.4332 MEETAFYQGPGFRFHPTDEEIVRYYLKKKLTGNLPSCFDYLAVIDIYKFEPWDLPSLSKLKTRDLEWYFFTALDKKYGNSSRTNRATDRGYWKTTGKDRAIKNGEETVGMKKTLVYHLGRAPHGDRSNWVMHEYRMIDETLAKAGVQDTYVLCRIFEKSGSGPKNGEKYGAPFVEEEWESFGEQVLPLPPVDNEPLKLEGFASDVDELVNPLAVSVPDDVLVDPLDVFYDELWKENLPDSTYEDFFETHDLDQDLDASNTVGSAELQSNFCYGECSTHPQYSQAFINERKQLEATLGMYEHEVDQPNNIADLYGGNINSVQDGYNGGTNHKENPLNFNFTSEELDKFFDAPDYLTGVTDEYMETNDIKNRDEFAPTEIDPSVAAMLDEYLVCPDDDVSKYICFDSPLNARSESPIASYGQTIIEQNVEGETYGSSLTNKHVFEAQSCHEDLPKEDLAAPNWVSGDANTFVKHANRLLANIPAPPAFASEFPAKELACGTHPAAESSNSAHITAGMISITDITFRGNAMDWMVGKNGGFNTVMSTGFSQTDVNSATLVPISGLVCSKTAFMLSHGWVFLMGFSVVILSLSFKIGSFMYTGK 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03824 600 Gene3D NAC domain 17 161 IPR036093 GO:0003677|GO:0006355
Mepo4g03824 600 Pfam No apical meristem (NAM) protein 10 136 IPR003441 GO:0003677|GO:0006355
Mepo4g03824 600 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Mepo4g03824 600 SUPERFAMILY NAC domain 7 158 IPR036093 GO:0003677|GO:0006355
Mepo4g03824 600 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 256 - -
Mepo4g03824 600 FunFam Nac domain-containing protein 86 17 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03824 Mepo-Chr4 47580398 47584007 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03824 305 592 NAC Transcription Factor Family AT5G04410 29.392 1.36e-17 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo4g03824 NAM 1.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03824 - - mtr:25484826 1088.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03824 4 47580398 47584007 Mepo4g03824 4 47580398 47584007 ECH