Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03821 ATGGCGAGGAGAAAGGTGAAGCTGGCCTTAATTGCCGATGACTCGGCAAGGAAGGCAAGCTACAATAAAAGAAAGAAGGGTCTCATAAAGAAGGTAAGTGAACTCACCATTCTTTGTGATGTTCCAGCTTGTGCTATAATTTCCAGTCCATTTGATTCTCAGACAGAGGTCTGGCCGCATCCAGAAGGAGCCAATAAGATAATTGAGAGGTTTCAAAATTTATCTCTGGTAGATGAAACTAGAAATGTGAGCCATGAAAGGTATATCATGCAGATGATTGCCAAGGCCAGGGACAAACTAAGAAAGATGAAATATGAGAATCATGAGCAAGAGTGGGATCTTTTTATGCTCAGGAACTTGCAAGCCAACAATATGCTTGATGAACTGACTACTGAAGAAGTGAAGGATCTTGGTAAGCGAGCTGAGAAGAAGTTGAAGGAGGTTGATGGAAAGATTGAAACACTTGATTGA 471 0.414 MARRKVKLALIADDSARKASYNKRKKGLIKKVSELTILCDVPACAIISSPFDSQTEVWPHPEGANKIIERFQNLSLVDETRNVSHERYIMQMIAKARDKLRKMKYENHEQEWDLFMLRNLQANNMLDELTTEEVKDLGKRAEKKLKEVDGKIETLD 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03821 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo4g03821 156 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo4g03821 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo4g03821 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo4g03821 156 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mepo4g03821 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Mepo4g03821 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Mepo4g03821 156 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mepo4g03821 156 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Mepo4g03821 156 PANTHER MADS BOX PROTEIN 3 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03821 Mepo-Chr4 47540565 47541210 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03821 3 155 Type I MADS-box Gene Family AT1G65300 38.312 1.84e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo4g03821 SRF-TF 1.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03821 - - gmx:100792290 171.785