Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03819 ATGGAACCTGCCCCTGAACAACCACAACAACAAATCTCTTTAGCCTCTAGAGAAATCACCAATATCATCAAAGGCAAAAGAACCAAAAGGGTTAGGCCACAATCTCCTATACCTTTCTCCATCACTGCTAATTCTTCAACTGGTGAAGGAGGAGGAGGAGGAGGAACAGGAGAAAGAGAAGATTGCAACAATGTTGATGATGTCAACAATAACACCATCATCATCAACACCAACAACAATAATACATCTCCAACAACTTCTTATGTTGAAGAAAAACAAGACAGTACTATTATTGAAGAAGAATATGATATGGCAAATTGTTTGATTCTATTGGCACAAGGACAAGCAAAGGAATCATCACCAAAGAACACGGATGATTTAGATGGTGGAATGATGAACTACACAAAATATAGCAGTAGAAAATTCATGGAAGCTGCTACTTTGGATTCTGGAAGAGCTGGTTTCTATGTTTATGAATGTAAAACATGCAACAGAACATTCCCTTCATTTCAAGCCCTTGGTGGTCATAGAGCAAGTCACAAGAAGCCAAAAGCTTTAGCAATTGCTCAAGAGAAAAAGCACTTATATGATGATGATCAAGAGTTTCAATTCAAACCCAATCATAAATCAATTTCCCTTCAATTGAATAACAATGGTAAGGGAAATCAACATGGTGGAAGCAACAACAACAAGTCTAAGGTTCATGAGTGTTCCATTTGTGGTTCTGAATTCACATCTGGACAAGCACTAGGTGGCCATATGAGGCGTCACCGCGCACCGGTGGGAACTTCTGCAGCCAACACCACACTCTCTTTGACACCAATGGCTTTGGAACATGATGAAGAACAACCTAGGAAGAAAAGGAATGTTTTGTCTTTGGATTTGGATCTCAACCTTCCTGCACCTGAAGATGATCATAGAGAATCTAAGTTTGCCTTTGCTTCCAAGCAACATCAACAACAACAAAATGGCCAAAAACAACAACAGCAGCAACAGCAACAACAAAAGCAACAAACAAGTCTTGTCTTCTCTGCACCAGCTTTGGTGGATTGTCATTACTGA 1062 0.3974 MEPAPEQPQQQISLASREITNIIKGKRTKRVRPQSPIPFSITANSSTGEGGGGGGTGEREDCNNVDDVNNNTIIINTNNNNTSPTTSYVEEKQDSTIIEEEYDMANCLILLAQGQAKESSPKNTDDLDGGMMNYTKYSSRKFMEAATLDSGRAGFYVYECKTCNRTFPSFQALGGHRASHKKPKALAIAQEKKHLYDDDQEFQFKPNHKSISLQLNNNGKGNQHGGSNNNKSKVHECSICGSEFTSGQALGGHMRRHRAPVGTSAANTTLSLTPMALEHDEEQPRKKRNVLSLDLDLNLPAPEDDHRESKFAFASKQHQQQQNGQKQQQQQQQQQKQQTSLVFSAPALVDCHY 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03819 353 MobiDBLite consensus disorder prediction 299 313 - -
Mepo4g03819 353 SUPERFAMILY beta-beta-alpha zinc fingers 157 257 IPR036236 -
Mepo4g03819 353 MobiDBLite consensus disorder prediction 211 233 - -
Mepo4g03819 353 Pfam C2H2-type zinc finger 234 260 - -
Mepo4g03819 353 Pfam C2H2-type zinc finger 157 183 - -
Mepo4g03819 353 PANTHER ZINC FINGER PROTEIN ZAT5 85 327 - -
Mepo4g03819 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 235 257 IPR013087 -
Mepo4g03819 353 MobiDBLite consensus disorder prediction 298 340 - -
Mepo4g03819 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 185 IPR013087 -
Mepo4g03819 353 MobiDBLite consensus disorder prediction 35 51 - -
Mepo4g03819 353 SMART c2h2final6 158 180 IPR013087 -
Mepo4g03819 353 SMART c2h2final6 235 257 IPR013087 -
Mepo4g03819 353 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Mepo4g03819 353 ProSitePatterns Zinc finger C2H2 type domain signature. 237 257 IPR013087 -
Mepo4g03819 353 MobiDBLite consensus disorder prediction 23 63 - -
Mepo4g03819 353 Gene3D Classic Zinc Finger 156 257 - -
Mepo4g03819 353 MobiDBLite consensus disorder prediction 314 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03819 Mepo-Chr4 47517449 47518840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03819 15 353 C2H2 Transcription Factor Family AT5G04390 46.070 8.37e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g03819 zf-C2H2_6 8.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03819 - - psat:127097550 526.554