Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03790 ATGAACAACACTTCCATTAATTCTGAAAATCCTTCAGAGAACTCAAATGCATTAGCATATTATTATATTGGATTGTCATTAGCCTTTATTCTCCTGATGATGTTCATGTCTCTATTTTCATGTTACTGGCAAAACAGGCTGCTATCTAGAGGCATCAACAACAGTAATCCTAACAGAACCGTGATCTGGACGGAGGGAGATACTGCAGTGATTAATATCGAAGATGCCATTCTGAATAGTTACCCCATTTTGTTGTACTCACAAGTCAAGTTTCATCATAAGGCTGATTCAACATCACTCATTTGCTCAATTTGTTTGGGAGATTATAAAGATTCAGAGTGGTTGCGTTTCTTACCTGATTGTGGTCACTTTTTTCATAAGGAGTGTATTGCTACATGGTTCAGGCTAAACCTCTCATGTCCCCTATGTCGAAACTCGCCACTCCCAACAGCTCTTCCAACTCCCCTTGCTGAAGTTACACTCTTGGCAACTACACATGATTGA 504 0.3948 MNNTSINSENPSENSNALAYYYIGLSLAFILLMMFMSLFSCYWQNRLLSRGINNSNPNRTVIWTEGDTAVINIEDAILNSYPILLYSQVKFHHKADSTSLICSICLGDYKDSEWLRFLPDCGHFFHKECIATWFRLNLSCPLCRNSPLPTALPTPLAEVTLLATTHD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03790 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 148 IPR013083 -
Mepo4g03790 167 SUPERFAMILY RING/U-box 79 149 - -
Mepo4g03790 167 CDD RING-H2_EL5-like 101 144 - -
Mepo4g03790 167 Pfam Ring finger domain 102 144 IPR001841 -
Mepo4g03790 167 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 158 IPR045899 -
Mepo4g03790 167 SMART ring_2 102 143 IPR001841 -
Mepo4g03790 167 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03790 Mepo-Chr4 47271899 47272642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03790 21 165 C3H Transcription Factor Family AT2G35910 42.953 4.28e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03790 - - adu:107466513 150.599