Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03788 ATGAACAACAACAACGGCACCTCGGAACCTCCTCACAACAACAACGGTTTTGACGCAAATGGGTTCACATATATCTTAATACTTGTATTTGGTCTCGTATTCATGGTTCTCTCAATAATTGTTGCTTGTATTCGACTTCGTAGTTCACGAAGTCGAAACATTCTCAATATTTTGTCCGGTTTTCCACCACATCGTCATGAAGACTCAATCATGGAACAGGGACTTCGTCATCATACCGACACAAGTTTTGAAGGATACCCGAAACTGTTATACTCTCAAATTCAGAAGAATGGTTCTTCAACTTCAATTAGTTGCTCTATTTGCTTAGGAGACTATAAAGAAAGTGACATGTTGAGGTTACTTCCTGATTGTGGTCATCTTTATCATGTTGCTTGTGTTGATCCATGGCTCATGTTACATTCCACTTGTCCCATATGTAGAAAATCATCACTAGCTTCAACCTAG 465 0.3914 MNNNNGTSEPPHNNNGFDANGFTYILILVFGLVFMVLSIIVACIRLRSSRSRNILNILSGFPPHRHEDSIMEQGLRHHTDTSFEGYPKLLYSQIQKNGSSTSISCSICLGDYKESDMLRLLPDCGHLYHVACVDPWLMLHSTCPICRKSSLAST 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03788 154 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Mepo4g03788 154 SMART ring_2 105 146 IPR001841 -
Mepo4g03788 154 Pfam Ring finger domain 104 147 IPR001841 -
Mepo4g03788 154 SUPERFAMILY RING/U-box 104 150 - -
Mepo4g03788 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 151 IPR013083 -
Mepo4g03788 154 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 152 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03788 Mepo-Chr4 47265037 47265501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03788 79 153 C3H Transcription Factor Family AT5G06490 55.556 7.14e-26 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03788 - - gmx:102663718 192.971