Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03780 ATGGCGGGGAATTTCAGATTCATGATGGATCAGAAGGATATTGTTAGATTCTTGACTACATCTATTGATAGTTTCATTCAAGATAGGTTAATCAACAAAGAACAAAGAACACAACATAAAGATCAGTGTGCTGAAAGATTAGCAGCTGAAGATGGAAACAATGACAAAGAAACTGAGGTAGAATATTCTGATCAAGCAGTATTAGCAAATTTGGATTGGGGTATTGAGGCTCTTGAAGAAGCTATTAATACCTATAATATGGAAACTAAGCTTGCAAGATTAGATTATGCTGAGAAAATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAAACTGCTGGAGTGCCAAATTCATATTTATCAGCTTGGGCACATTTGAATTTATCCTATTTATGGAAGTTGAGGAACAATATTAAGAGTTGTATTTATCATTCTCTTGAGATGTTCATCGTTGATCCTTTTTTCTCTAGGATTGATTTTGCTCCTGAATTATGGAAAAACCTGTTTCTTCCACATATGAGTTCAATTGTAGGGTGGTATTCAGAGGAGAGACATAAGCTTATGATAGAAGTGTTACCTGAATCTTCTGATTTTTCTTATACTGCTGATTTTGATAAAGTTTTCAACGAGTCTTTGGTATTTTCTATGAGACCAAATCAGCTTGAGAAATTGCAAAAACTTGAGCAGCTTTATGGAGAGTCTTTAGACGAGAACACAAGGCTATATGCCAAATACTACAATGATTGTATGAATCCTGATTCTACCTCAAGCAAGAAGGTAGTTCCTATGTTGCCGATTGCCGAGCCTCCAATGACTCCTTTGCATGAGTTGAGCCGGTCTGTTCCTGATTTTGTAAAGTTTGGTCCTATTTTGCCCAAGAGTTCTGGATTTTCTATGACAACAAGAAGATCTAATGATGGTTTAAATGAAACAACCAGAGAGAATATAGCTTCAAATTCCAACCATTCAAAGGGGGAACAATCGTCACTATGGGGTGCTAAGGATAGCATAATTGAAGAGATTGAAGACGACTCGGATTCTGAGCATTATGATGCATCTGTGGATTCCGATAAAATCAATATTTTCTCACCCGAACCTAAGAAAAATATCAAGGATGAAGATGTTGAACCAAAAGTATATCTGTCAAACCAGAAGAATCAAATGAATTCTCCCAATATCTCTCCTATGGAATCTCCAAGAAGAGCTTCGAATTATTCATCTACAAATCCTCATATCCGTAGGAAAAAAGAATCGAAGTTTTTGCGGTTACTATCTAATCGTTTTACAGGATCAATTGTTTCTGATCACTCTCTATCATCATCTCCAGACACGAGCTCCGATCATATTTTCACCGGCGATGAAGAAGTTATGGTCTTGAATAATATTAAGAGGAAGAGTGATAGTCAAACACCAAGTATGAATCAAGACAATGAGAATAGTCTGGTGCTGAATGACAGTTCACATTGTGAAAGTGAAGATGGTTATCAAAGCTCTAGTTCATTTCCAAAATTAGAGAAACTGACTATTGGATCAAAACCACCAAAAGATTTTGTTTGTCCAATCACAGGTCAGATATTTAGCGATCCTGTCACCCTTGAAACAGGCCAAACCTATGAAAGAAAAGCTATTCAAGAGTGGCTTGGAACAGGAAACACAACGTGCCCCATCACGCGGCAGGCTCTATCTGCAAACATCTTACCAAAAACAAACTATGTTTTGAAGAGATTGATAGTATCATGGAAAGAACAGAATCCTGAACTAGCTCAAGAATTCTCAAATTCTAACACACCGAGGGGTTCTTCATGTTCTCCCTCTGCAAAAGACATCACAATGGTTTCAAGTATACAAAGAACAACTGATTCACCAAGTCAGAAGTACAAAGACGATTATATTAGACAAAGGAACAACAGATTTACGAGGGTTTCTGTCGGTGCATCTCCAACTAGTGTGTTATCGCAAGCTGCAGTTGAAACGATTATAAATTCCTTGACACCTTACATCACAAGTCTATGTACATCAGAAAACTTGCAGGACTGTGAACAAGCTGTATTGGAAATAGCAAGATTGTGGAAGGATTCAAAGACTGATCCTCAGATTCATTCTTATTTATCAAAGCCAACTGTCGTAAGTGGTTTAGTAGAAATTCTCTCGGCTTCTCTAAATAGAGAAGTTCTAAGAAGATCAATTTATATTCTTTCAGAGCTAATCTTTTCAGATGAAAGAGTTGGAGAAACACTTAACAGTGTAGATTCTGATTTTGATTGCTTGGCTATGCTACTTAAGAATGGTTTGGCCGAGGCTGCACTACTTATTTACCAACTAAGGCCAGTTTTTGCTCAGCTTTCAGAACATGAACTTATACCCTCTCTTATCCAAGTGATCCAGAACAAAAGTGAGGATATAGATGATTTTCAGTTAGCAATAGATCCTAAAGCTGCCGCCATAGCAATTCTTGAGCAAATTTTAATAGGAGGGGATGAATATAATAGGTCAGTCAATGCTTCAAGTGTTATCTCAGCAAACGGAATTCCAGCCATAGTTAAGTATTTGGACAAAACCGAAGGAAGGAGACCTGTAATTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAAGTTGCAAGAGCTCAATAGCAAATAGAATTGAATTATCACCTGTTCTTGAATTATTTCACGCTGGAAACGATAGCGTGAGAGGAATCTGTGTGGAGTTTCTCTCAGAACTGGTTCGATTGAATAGAAGGACGTCCAGCAACCATATATTACAGATAATCAAGGATGAAGGAGCTTTCAGTACAATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAACATCAAATTGCTGTTGCCAGTCTTCTTCTTCAACTTGATCTTCTGGCTGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATAGAAGCACTTTGGCAAAAAGACTTCTCAAATAATCAAATGAAGGCTTTAGATGCTTTACTATTTCTTATTGGACATGTCACTTCCTCAGGAAAGTCATATACTGAAGCTGGATTGCTGAAGATTGCAGGATTTGATCAACCTTACAATGTTTTAATGAAGGCCGAGCAATTGGGACACTCTGACAATGATTTCATGGAAACAATGGAGGATGACAAAAATGCCATGAAATCTTGGCAGAAAAGGGTAGCTTCTGTACTCTGCAATCATGAAAACGGTTCAATATTTCAAGCTTTGGAAGAATGCCTAAAGAGTAACTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGCCACATGGCTGACACACATGCTCTTTACTCTACCTGATACTGGTGTAAGGGATGTTGCTCGGAAATCCCTGCTTGAGGCACTTATGAATGTCCTCCAGTCATCCAAGAACCTGGAGGAAAAGATCCTAGCAACCCTAGCTTTGAAGTCTTTCATTAGTGATCCAACTGTTCACGAAGTACTTAGAGTTTATGCTAAAAGCATCTACAGAATCTTGAGGAAGCTGAAGAAATATTCAACAGTTGCAGCTGATATTTTGAAAGCCTTACTAAACTTAAATTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTAGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTGCTTTCTTTGCTTTACCTCAACGGTCAGGTCTTGAGTGGACATGCTGATGGAACTATCAAGGTATGGGATGCAAGGAAGAGAATACCACGGGTGATTCAAGAAACTCGTGAGCACAAGAAAGCTGTTACATCTCTCTGTTCTTCAGTTGATAAACTATACAGTTCTTCCTTGGACAAAACAATCCGGGTTTGGACAATTAAACCGGACGGGATTAAATGTATAGATGTTTACGACATTAAGGAGGCAGTGTATGAGCTAGCAGCCAATGCTAAATTAGCATGCTATGTAACTCAAGGAACGGGAGTTAAGGTTTTCAATTGGTTAGATGCTCCAAAGTTCATCAATTTCAACAAATATGTGAAATGCCTTGCTGTTGCCGGGGACAAACTGTACTGTGGTTGCTCTGGTTACAGCATACAGGAGGTTGACTTGTCCAAATATACATCAACTTCATTCTTCACTGGTGCAAGAAAATTGTTGGGAAAACAAACCATACACTCCCTTCAAATTCATGATGATTTGCTCTTTGCTTGTGGTTCTTCTATTGATGCAACCGCAGGAAAGATATTTTCTCTTTCCTCCAAAATGGTGGTGGGATCGCTATCAACTGGACTTGACGTCCATCGTGTAGCCATCAACAGTGACTTCATATTTGCTGGTACGAAATTTGGCACCATTGAAGTTTGGCTAAAAGACAAATTCACCCGAGTTGCTTCCATCAAAATGGCTGGTGGTAACACAAAAATTACATCATTAGCATCAGACGCTGATGGAATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTCTGGGCATTGGACTAA 4470 0.3852 MAGNFRFMMDQKDIVRFLTTSIDSFIQDRLINKEQRTQHKDQCAERLAAEDGNNDKETEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIKSCIYHSLEMFIVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHKLMIEVLPESSDFSYTADFDKVFNESLVFSMRPNQLEKLQKLEQLYGESLDENTRLYAKYYNDCMNPDSTSSKKVVPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSSGFSMTTRRSNDGLNETTRENIASNSNHSKGEQSSLWGAKDSIIEEIEDDSDSEHYDASVDSDKINIFSPEPKKNIKDEDVEPKVYLSNQKNQMNSPNISPMESPRRASNYSSTNPHIRRKKESKFLRLLSNRFTGSIVSDHSLSSSPDTSSDHIFTGDEEVMVLNNIKRKSDSQTPSMNQDNENSLVLNDSSHCESEDGYQSSSSFPKLEKLTIGSKPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQALSANILPKTNYVLKRLIVSWKEQNPELAQEFSNSNTPRGSSCSPSAKDITMVSSIQRTTDSPSQKYKDDYIRQRNNRFTRVSVGASPTSVLSQAAVETIINSLTPYITSLCTSENLQDCEQAVLEIARLWKDSKTDPQIHSYLSKPTVVSGLVEILSASLNREVLRRSIYILSELIFSDERVGETLNSVDSDFDCLAMLLKNGLAEAALLIYQLRPVFAQLSEHELIPSLIQVIQNKSEDIDDFQLAIDPKAAAIAILEQILIGGDEYNRSVNASSVISANGIPAIVKYLDKTEGRRPVISILLCCMQAEKSCKSSIANRIELSPVLELFHAGNDSVRGICVEFLSELVRLNRRTSSNHILQIIKDEGAFSTMHTFLVYLQMAPMEHQIAVASLLLQLDLLAEPRKMSIYREEAVETLIEALWQKDFSNNQMKALDALLFLIGHVTSSGKSYTEAGLLKIAGFDQPYNVLMKAEQLGHSDNDFMETMEDDKNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFTLPDTGVRDVARKSLLEALMNVLQSSKNLEEKILATLALKSFISDPTVHEVLRVYAKSIYRILRKLKKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLLYLNGQVLSGHADGTIKVWDARKRIPRVIQETREHKKAVTSLCSSVDKLYSSSLDKTIRVWTIKPDGIKCIDVYDIKEAVYELAANAKLACYVTQGTGVKVFNWLDAPKFINFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSKYTSTSFFTGARKLLGKQTIHSLQIHDDLLFACGSSIDATAGKIFSLSSKMVVGSLSTGLDVHRVAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGNTKITSLASDADGMMLFVGSSDGKIQVWALD 1489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03780 1489 ProSiteProfiles Trp-Asp (WD) repeats profile. 1248 1280 IPR001680 GO:0005515
Mepo4g03780 1489 ProSiteProfiles Trp-Asp (WD) repeats profile. 1455 1489 IPR001680 GO:0005515
Mepo4g03780 1489 Gene3D - 1185 1489 IPR015943 GO:0005515
Mepo4g03780 1489 MobiDBLite consensus disorder prediction 344 412 - -
Mepo4g03780 1489 SUPERFAMILY RING/U-box 513 586 - -
Mepo4g03780 1489 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1488 - -
Mepo4g03780 1489 ProSiteProfiles U-box domain profile. 513 588 IPR003613 GO:0004842|GO:0016567
Mepo4g03780 1489 SMART Ubox_2 517 581 IPR003613 GO:0004842|GO:0016567
Mepo4g03780 1489 MobiDBLite consensus disorder prediction 297 331 - -
Mepo4g03780 1489 MobiDBLite consensus disorder prediction 381 410 - -
Mepo4g03780 1489 Pfam WD domain, G-beta repeat 1458 1486 IPR001680 GO:0005515
Mepo4g03780 1489 Pfam WD domain, G-beta repeat 1247 1277 IPR001680 GO:0005515
Mepo4g03780 1489 Pfam WD domain, G-beta repeat 1220 1236 IPR001680 GO:0005515
Mepo4g03780 1489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 514 589 IPR013083 -
Mepo4g03780 1489 MobiDBLite consensus disorder prediction 352 380 - -
Mepo4g03780 1489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1455 1489 - -
Mepo4g03780 1489 Coils Coil 1117 1137 - -
Mepo4g03780 1489 CDD RING-Ubox_PUB 515 567 IPR045210 -
Mepo4g03780 1489 SMART WD40_4 1198 1236 IPR001680 GO:0005515
Mepo4g03780 1489 SMART WD40_4 1241 1278 IPR001680 GO:0005515
Mepo4g03780 1489 SMART WD40_4 1446 1487 IPR001680 GO:0005515
Mepo4g03780 1489 SUPERFAMILY ARM repeat 660 1019 IPR016024 -
Mepo4g03780 1489 Gene3D - 650 1184 IPR011989 -
Mepo4g03780 1489 SUPERFAMILY WD40 repeat-like 1221 1488 IPR036322 GO:0005515
Mepo4g03780 1489 ProSiteProfiles Trp-Asp (WD) repeats profile. 1223 1236 IPR001680 GO:0005515
Mepo4g03780 1489 Pfam U-box domain 515 585 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03780 Mepo-Chr4 47213994 47221280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03780 504 911 U-box Gene Family AT1G23030 24.651 2.22e-18 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03780 - - gmx:100776142 2395.93