Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03715 ATGTCATTTAGGAGTATGATCATGGATAGGAAGGGATTTGACGTGAAATTCGGGTATGGTATGAGATCAAGATCACAGTCACACTGTGATGTTAATGTTATTGCCGATGGTGCTTTGGTGATTGATGATGGGTTGAGTCAGAGTTGTTGGGCTAATATGCCCCATGAGCTTTTGAGGGATGTGCTTATGAGAATTGAGGTTTCAGAGGATACTTGGCCGGCTCGGAAAAATGTCGTTGCTTGCGCCGGTGTTTGCAGGAGCTGGAGAGAAATCGTGAAGGAACTTGTTAAGCCTCCTCAATTGTCCAGCAAGTTGACATTCCCTGTCTCCTTGAAGCAGCCTGGTCCAAGGGGCTCTCTCATCCAGTGCTATATTAAACGAAATCGCGGTGATCAAATTTATTATCTTTTTCTCAGTTTGAACCAAGCCTCAACTGATGACGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGACGTGCAACCCACACTGACTATATCATTTCTCTAAATTTGGATGATGTATCAAGAAGGAGTAGCACCTATGTTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTTACAGTGTATGATGCACACCCTCCAATTTATGGAGACAGATTTGCAAAGTCCCGCACCACCAGGCTAAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCAGGAAACTATCCCATCGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGGATTATGCAGTGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTTGCCCCGACGCAGACTCAATTTCTTCATAGCAGAGCTGATACTTCTCCATCTATCCCGTTCTTCAGATCAAAATCAACCCGCTCAGAGAATCTCCAATCAGCAGCACCTTTGATAAGTCAAAATGATGGGGAGCTGGTGTTAAAAAACAAGGCTCCTAGGTGGCATGAACAACTCCAATGCTGGTGTTTGAACTTTAATGGACGTGTGACGGTCGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCTAAAAATGGAGTTTCTGAGGAGGCCCAGGAAAATGTCATTCTGCAGTTTGGAAAAGTCGGAAAGGATGTGTTCACTATGGATTACCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCCTGCGAGTGA 1209 0.4524 MSFRSMIMDRKGFDVKFGYGMRSRSQSHCDVNVIADGALVIDDGLSQSCWANMPHELLRDVLMRIEVSEDTWPARKNVVACAGVCRSWREIVKELVKPPQLSSKLTFPVSLKQPGPRGSLIQCYIKRNRGDQIYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNLDDVSRRSSTYVGKLRSNFLGTKFTVYDAHPPIYGDRFAKSRTTRLSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRADTSPSIPFFRSKSTRSENLQSAAPLISQNDGELVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEEAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03715 402 CDD F-box_AtTLP-like 50 94 - -
Mepo4g03715 402 PANTHER TUBBY-RELATED 45 400 - -
Mepo4g03715 402 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Mepo4g03715 402 PRINTS Tubby superfamily signature 314 331 IPR000007 -
Mepo4g03715 402 PRINTS Tubby superfamily signature 332 348 IPR000007 -
Mepo4g03715 402 PRINTS Tubby superfamily signature 181 205 IPR000007 -
Mepo4g03715 402 PRINTS Tubby superfamily signature 359 378 IPR000007 -
Mepo4g03715 402 PRINTS Tubby superfamily signature 380 402 IPR000007 -
Mepo4g03715 402 PRINTS Tubby superfamily signature 165 181 IPR000007 -
Mepo4g03715 402 Pfam F-box domain 50 95 IPR001810 GO:0005515
Mepo4g03715 402 ProSitePatterns Tub family signature 2. 387 402 IPR018066 -
Mepo4g03715 402 Gene3D Tubby Protein; Chain A 107 402 IPR025659 -
Mepo4g03715 402 Pfam Tub family 111 397 IPR000007 -
Mepo4g03715 402 SUPERFAMILY Tubby C-terminal domain-like 99 402 IPR025659 -
Mepo4g03715 402 FunFam Tubby-like F-box protein 107 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03715 Mepo-Chr4 46617026 46620948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03715 1 402 TUB Transcription Factor Family AT2G47900 72.464 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mepo4g03715 Tub 3.5e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03715 K19600 - gmx:100809257 697.197