Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03703 ATGGACTTGTACGGTCGGAGCCCCACTAGAAACGGATCCAACCCGCTTAATCAACATGAATGGCGTTCACCTGCTGCTGCTCTTGGAGAGTCGATGTGGCATTTATCACTTGGTGCTGCTGCTGGTGGTGGTGGTGAATCTTATCCGGAAAGACATGGTGTACCGAATTGTGCTTATTATATGAGAACTGGGTTTTGTGGATATGGTGGAAGGTGTCGTTTCAATCACCCGCGTGATCGTGCTGCGGTTGCTGCTGCAGTAAGAGCTACAGGGGACTACCCAGAGAGGCTTGGCGAACCTCCATGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGCGCGTCCTGTAAATTCCACCATCCCAAAAATGGAGGGGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCATTACGACCGGGCGAGAATGAGTGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGCGTAACTTGTAAATTCCACCATCCTCAACCTGCTGGCACTTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCGACGGTTCCTCCTCTGCCGGAACAGTTTGGAGGAGCTTCTGCAAGCGTGCGAGTGGCTAGACCTCCTGTGTTACCCGGTTCATATGTACAAGGGGCTTATGGTCCCGTGCTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCTCCTTTAAGCCCTGTGTTATCTCCTGGCGCGCAACCTGCTGTTGGGGCTACTTCTCTTTATGGAGTAACCCAGTTGTCATCATCAACTTCAGCTTTTGCTAGACCTTATACTCCTCTGCCCTCTTCTCCCGGTCCTGCAGGAAGCACTTTGCAGGAAAAAGTATTTCCTGAAAGACCTGGTGAACCGGTCTGCCAATACTATATGAGAACTGGGGACTGTAAATTTGGATTAGCCTGTAGATATCATCATCCACGGGACCAGGTTGCTGCACGGCCACTTCTTAGTCCCTTTGGTCTTCCTCTACGCCCGGGTGTACAGCCTTGTTCATTTTATATACAAAATGGGCACTGCAAGTTTGGCTCGACGTGCAAGTTTGATCATCCCGTGGGGTCAATGAGATACAGTCCATCAGCATCTTCTCTTATTGATGTTCCAGTTGCTCCATACCCAGTTGGGTCTTTACTATCTAACCTGGTTCCGTCAACATCTTCAGAATTTCGGCCTGAACTGAAGTCAGGGTCCAATTCCTTTTCAGCCAGAATGCATTCATCTGGAAATGGTTCTGGTACCTCTGTTGGTTTAATTTTTTCACAAGGTGGGTCTGTCTCACTGTCTGGTGCGCAACTCTCAAGCCAGAGTTCTGCTTCTTTGAACGGTAGCAGAAGCAGCAGACAAGAGATACATTGA 1413 0.482 MDLYGRSPTRNGSNPLNQHEWRSPAAALGESMWHLSLGAAAGGGGESYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAAVAAAVRATGDYPERLGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGENECSYYLKTGQCKFGVTCKFHHPQPAGTSLPASAPQFYQQVQSPTVPPLPEQFGGASASVRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPLSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSPGPAGSTLQEKVFPERPGEPVCQYYMRTGDCKFGLACRYHHPRDQVAARPLLSPFGLPLRPGVQPCSFYIQNGHCKFGSTCKFDHPVGSMRYSPSASSLIDVPVAPYPVGSLLSNLVPSTSSEFRPELKSGSNSFSARMHSSGNGSGTSVGLIFSQGGSVSLSGAQLSSQSSASLNGSRSSRQEIH 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03703 470 SUPERFAMILY CCCH zinc finger 99 124 IPR036855 GO:0046872
Mepo4g03703 470 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Mepo4g03703 470 ProSiteProfiles Zinc finger C3H1-type profile. 51 79 IPR000571 GO:0046872
Mepo4g03703 470 MobiDBLite consensus disorder prediction 407 426 - -
Mepo4g03703 470 SMART c3hfinal6 96 123 IPR000571 GO:0046872
Mepo4g03703 470 SMART c3hfinal6 142 169 IPR000571 GO:0046872
Mepo4g03703 470 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Mepo4g03703 470 SMART c3hfinal6 51 78 IPR000571 GO:0046872
Mepo4g03703 470 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Mepo4g03703 470 SUPERFAMILY CCCH zinc finger 54 80 IPR036855 GO:0046872
Mepo4g03703 470 PANTHER PROTEIN PHOSPHATASE RELATED 30 392 - -
Mepo4g03703 470 MobiDBLite consensus disorder prediction 446 470 - -
Mepo4g03703 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 346 370 IPR000571 GO:0046872
Mepo4g03703 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 78 IPR000571 GO:0046872
Mepo4g03703 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
Mepo4g03703 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 169 IPR000571 GO:0046872
Mepo4g03703 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 123 IPR000571 GO:0046872
Mepo4g03703 470 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Mepo4g03703 470 Gene3D - 45 92 - -
Mepo4g03703 470 Gene3D - 95 179 - -
Mepo4g03703 470 Gene3D - 299 381 - -
Mepo4g03703 470 ProSiteProfiles Zinc finger C3H1-type profile. 344 372 IPR000571 GO:0046872
Mepo4g03703 470 SUPERFAMILY CCCH zinc finger 303 330 IPR036855 GO:0046872
Mepo4g03703 470 ProSiteProfiles Zinc finger C3H1-type profile. 96 124 IPR000571 GO:0046872
Mepo4g03703 470 SUPERFAMILY CCCH zinc finger 347 375 IPR036855 GO:0046872
Mepo4g03703 470 SUPERFAMILY CCCH zinc finger 145 170 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03703 Mepo-Chr4 46448656 46453483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03703 19 417 C2H2 Transcription Factor Family AT5G18550 52.029 2.95e-125 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo4g03703 zf-CCCH 1.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03703 - - lja:Lj5g3v1665190.1 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03703 4 46448656 46453483 Mepo4g03703 4 46448656 46453483 ECH