Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03687 ATGAAGTTCTGCAAGACCTATCAGGAATACATGCAAGCTCAGGAGCAGAAGAAGCTCCCTGTAGTTGGATTCAAGAACCTCAAAAAGATCATGAAAAAATGTAGACGATCTTCTCAATTCCACAAACCTTGTCCTGATCAATGCCCATTGTGCGATGGGACCTTTTTCCCTTCCCTTCTCAATGAAATGTCAGAAATAGTGGGATGCTTTAATCAGCGTGCACAAAAACTGCTGGAACGACATCTTGCTTCTGGATTCCGAAAGTACATTCTCATGTTGAAAGGAAAATCAAAAAGGAATCATACTACTTTAATTCATGAAGGCAGAGATCTAGTTACATATGCACTTGTTAATGCTGTAGCAATTCGCAAAATACTAAAGAAATACGATAAGATTCATTATTCTAAGCAAGGGCAATTATTCAAGTCACAAGCCCAGACTATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTATTGAGCTGATGGCATTACATATCAATCTAAGGGAAACTAAAGACAAGTCAAGGAAGGCAACCACATTATTCAATGGATGCTGTCTCACATTTAAGGATGGAAAACCATCACTTGCTTGTGAGCTCTTTGATTCCATCAAAATTGATATTGATCTGACTTGCTCTATATGTTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGTGGCCACATATTCTGCTACAGTTGTGCTTGCTCAGCTGCATCTGTTACTATTGTTGATGGGCTTAAGGCAACACATTCTAAAGAGAAATGTCCTATGTGCCGAGAGGAAGGAGTTTATGAAGGTGCTGTACACTTGGAAGAATTGAATATTTTGTTAGGAAAAAGCTGCAAGGAGTACTGGGAGGAAAGACTTCAGATGGAAAGAGTAGAGAGGGTCAAGCAAGCAAAGGAGCACTGGGAAACGCAGTGTAGAGCGTTCATGGGCATCTAA 951 0.4038 MKFCKTYQEYMQAQEQKKLPVVGFKNLKKIMKKCRRSSQFHKPCPDQCPLCDGTFFPSLLNEMSEIVGCFNQRAQKLLERHLASGFRKYILMLKGKSKRNHTTLIHEGRDLVTYALVNAVAIRKILKKYDKIHYSKQGQLFKSQAQTMHKEILQSPWLIELMALHINLRETKDKSRKATTLFNGCCLTFKDGKPSLACELFDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYSCACSAASVTIVDGLKATHSKEKCPMCREEGVYEGAVHLEELNILLGKSCKEYWEERLQMERVERVKQAKEHWETQCRAFMGI 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03687 316 ProSitePatterns Zinc finger RING-type signature. 227 236 IPR017907 -
Mepo4g03687 316 Pfam Zinc finger, C3HC4 type (RING finger) 209 263 - -
Mepo4g03687 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 314 IPR013083 -
Mepo4g03687 316 ProSiteProfiles Zinc finger RING-type profile. 212 261 IPR001841 -
Mepo4g03687 316 CDD SPX_BAH1-like 2 139 - -
Mepo4g03687 316 CDD RING-HC_BAH1-like 202 275 - -
Mepo4g03687 316 SUPERFAMILY RING/U-box 205 264 - -
Mepo4g03687 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 316 IPR033326 -
Mepo4g03687 316 SMART ring_2 212 260 IPR001841 -
Mepo4g03687 316 ProSiteProfiles SPX domain profile. 1 143 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03687 Mepo-Chr4 46266534 46271200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03687 209 263 C3H Transcription Factor Family AT4G28270 40.000 1.45e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03687 K16275 - gmx:100803060 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03687 4 46266534 46271200 Mepo4g03687 4 46266534 46271200 ECH
Mepo4g03687 4 46266534 46271200 Mepo3g03716 3 46781598 46784571 PCT