Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03668 ATGAGTAGACATTTGAGCAGAACTGTCTATGTTGGGAATCTACCTGGTGATATCCGTGAAAGAGAAGTTAAACATTTGTTTATGAAGTATGGTCACATAACTCGCATTGATCTAAAGGTTCCGCCAAGGCCCCCTTGCTATGCATTTGTAGTGTTTAAAGATGCTCTAAATGCTGACGATGCAATTTGTGAGTGTGATGGCTATGATTTTGATGGGTGCCGATTACGGGTCGAAGCTGCACATGTTGGTTATTGTAATTCATCTTCAAGAGATCGATACAGTATTCACAGCAATGGCCAGGGTGGTCGAGGAGTATCCAGTCACTCTGAATATCGTGTTCTAGTCAATCGACTGCCCTCTTCTGCATCCTGCCAGGATCTTAAGGATCACATGCGAAAAGCAGGGGATGTTTGCTTTTCCCAGGTTGTTCATGATGGAAGGGGTACTACTGGGATTGTGGATTACACGAACTGCGATGATATGAAATATGCTATCAAAAAGCTTGACGGCTCTGAGTTCCGGAACGCTTTTTCCAGGTCTTACGTTCGTGTGAGGGAATATGATTCGAGGCGGGACTCTAGAAGTCCTGGTCGTGGCCCTTCTCATTCTAGGGGAAGAAGATATAGCCGCAGTCGCAGGTGCAGCCGCAGCTACAGTCCAGGACATAGCCAAAGCAAATTTCCCAAGGGTAAATCCTCACAATGTTCACCAGCAAGATTAGTTTCTCGTTCTCGCTCCAGATCTAGATCCTGTTCTTTATCAGGACCACGATCAAGGCCTAGGTCTCCATTACCTCTGCGTAATAAAAGCCCCAAAAAGCACAGTGCTAGCAGGACTCCAAGTAGGAGCAGGAGCCGTAGCAAGAGTTTGTCCAGAATGGATAACCTTATAATGGAGGCTATATCTAGCTTGAATCAGGTGGGTGGTTCTAATGAAACAAGGATTGCTAATTTCATAGAGGACCACCACGGGTCACCGTTAAACTTCAAAGAGTCGCTGTCAGCAAGACTGAAGTCTCTCACATCTAGTGGAAAACTGATCAAGGTGAAAAACTACAGGATTGCGCCTACCTCAGCATATCCAGAAAGAGGAAGACAATCGCCCGTGTTGGAAGGGAGGCAGAATGCCTCTATGAACTGTGACAGGGATTTGAGCTATAGCCCTACACAGTCTGAGTTAGACTTTCAATTAGCAATGATAATGTCCGTGTCTGCACAAGAGGCAGCCACATTTGCTGAAGTGGAAGCCCTCATAGAGGAAGCGTGA 1266 0.4597 MSRHLSRTVYVGNLPGDIREREVKHLFMKYGHITRIDLKVPPRPPCYAFVVFKDALNADDAICECDGYDFDGCRLRVEAAHVGYCNSSSRDRYSIHSNGQGGRGVSSHSEYRVLVNRLPSSASCQDLKDHMRKAGDVCFSQVVHDGRGTTGIVDYTNCDDMKYAIKKLDGSEFRNAFSRSYVRVREYDSRRDSRSPGRGPSHSRGRRYSRSRRCSRSYSPGHSQSKFPKGKSSQCSPARLVSRSRSRSRSCSLSGPRSRPRSPLPLRNKSPKKHSASRTPSRSRSRSKSLSRMDNLIMEAISSLNQVGGSNETRIANFIEDHHGSPLNFKESLSARLKSLTSSGKLIKVKNYRIAPTSAYPERGRQSPVLEGRQNASMNCDRDLSYSPTQSELDFQLAMIMSVSAQEAATFAEVEALIEEA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03668 421 SUPERFAMILY "Winged helix" DNA-binding domain 287 364 IPR036390 -
Mepo4g03668 421 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 291 - -
Mepo4g03668 421 MobiDBLite consensus disorder prediction 185 292 - -
Mepo4g03668 421 CDD RRM2_SF2_plant_like 111 186 - -
Mepo4g03668 421 SUPERFAMILY RNA-binding domain, RBD 6 176 IPR035979 GO:0003676
Mepo4g03668 421 MobiDBLite consensus disorder prediction 185 199 - -
Mepo4g03668 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Mepo4g03668 421 SMART h15plus2 287 352 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo4g03668 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Mepo4g03668 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Mepo4g03668 421 MobiDBLite consensus disorder prediction 266 281 - -
Mepo4g03668 421 Gene3D - 286 364 IPR036388 -
Mepo4g03668 421 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Mepo4g03668 421 SMART rrm1_1 112 183 IPR000504 GO:0003723
Mepo4g03668 421 SMART rrm1_1 8 78 IPR000504 GO:0003723
Mepo4g03668 421 Pfam linker histone H1 and H5 family 293 351 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo4g03668 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Mepo4g03668 421 Gene3D - 2 110 IPR012677 -
Mepo4g03668 421 MobiDBLite consensus disorder prediction 214 257 - -
Mepo4g03668 421 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 286 356 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo4g03668 421 Gene3D - 111 188 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03668 Mepo-Chr4 45955666 45960246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03668 292 405 Single Myb Histone (SMH) Gene Family AT1G49950 40.984 3.02e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03668 K12890 - gmx:100789847 345.51