Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03631 ATGCTTGGAACGAGTCACTCTTCGCAAGTCTTTCGCGGTGTTCATTTCGCTCTCTTTGGTTTCGATCATCTCACCGAAAACAAGATTCGATTTAAGCTTGTCAATGGCGGTGGAGTTGATGCGGGGAAGAACACTGGAAATTGCACGCATGTTATTGTTGATAAAATTGCTTATGATGATCCGGTGTGTGTTGCTGCAAGAGAGGATGGAAAGACGTTGGTGACTGCATTGTGGGTTGAACATAGTGCTGATATTGGAATGCCTGTTGATGCTACCTCGGTTATGTACAGACCGCTTAAAAAATTGGATGGAATTCCGGGTGCAAAAGATTTGGTTGTCTGCTTGACTGGCTATCTACGCCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCACAGTTTTCTAAACCTTTGGTGGCAAACAAGGTTACTCATCTTATATGCTACAAATTTGAAGGGGAGAAGTACGAGCTTGCCAAGAGATTGGCCACAATAAAGCTAGTTAATCATCGTTGGCTGGAAGATTGCTTGAAGGATTGGGCACTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAATTGGAGATGATGGCGGAAGAGGCTAAGGATTCTGAGGATGAGGCTGAAGATTCCAAGCTGGGGCAATCAGGGGGAAGGACTATTAGCAAAAGTCCCCCTGGTTCAAAATTTGGCACAGCTGTGACTCACGGATTGTCAAAACCTTTAAGAGAAGAGGCATCAAATGCCATCCCAAATTCTACTGGTCCACAAGTTTTTCCAAATGCCAATAATGGTAAAGACTCTTCGATTACTACAGGAAATAAGAACAATTCTGGTCAAGATGTAGACTTGCATAATATTGGCGACCTGAAGGTAAGCTGTCAGGTTCCTGATGTTACTTTGCATTCTACATCACGTCAGCTACCTGAATCATATGTTAGGACCATTGAGTCTAAGAATGCTGATTTTCCAAAACCACCTGGCTTCCAGGGTCAAGATCAAGATATTACTGGAAATATAAATTCATCTGGTCTGCGGCCTAATCTGCATGATGACAATTTGGAGACCGAGAAGTTAAGTTACACAAGATCAACTTCTACAAGTGCTGATGGACTTGCCCATTCAGATGAAAAGCTCGGTGCTACGAGTTATTCTAGAAAGAACCAAAAAGGGTTTACCTTTTCCAGGGCAGTAGATCAATGTGAAGGCAGAGAAGGCAACAGTCTTGAAACCCCTTCCACCAAGGTAGAAAAGACAAGTGAGGGAATCAAATCTGCATGTGTTGAAGGTTCTGGGAATGAAACCGGTGTTATTCAAGAGGTTTATCGAAATAATTCATTGCCTCAAAAGAGGACAAATGAAGCTGCTTCTTCTACCAAATTAAAATCAAGAAAGATCACTAGTAATGCAAAATTGTCTATTGAAAAAACACCATTAACAAATGGTAAATCTCAAGGATTGAAAGTGCCATCTGTGGTTGATGAGCCACCTGTGTCTGATGGCTTTCTTTCTGTCGACAAAGATGGTATAAATAACTTGAATACCTGCTTGATTTCTAAATCTGCAGCTTCTGCCTCCAACTCAGTGGCATTTGATAAGCCTATCTCAGGAAACGCAGAATCTGCTCAACGTGATAATGCTTATCAGAATTCAGTACAAAAGACTGTTCAGAGCTTAAATAAGTCTAAAATTGGGGGTGAGCCCGATGTAACAGGTTTTGGAAAGGGGCATGGTGATAACGAAGCAGAGCAACTTAATGTCACAACACATCTTGAGTGTTCATCACCTGGAAAAAATTCAAAGAATGAAGGATGTCCTGGTATTGATAATTGGGATTTAAGCAATGAAGAAAGCAATAAACTGATCAGAAAGTCACCCCGCAAGAAGTCAGCTGCCAAGAGAACTTTGGGTTCTAGACCCAGAAAAGGTGTTACTGCTAAACTGAAAAGTTCAGTTTGCTTGAATAAAACTACACAGCGAGATGAAGGTGTAAGTTCTTCCGGCAGAAGCAAAGAAGCAGCAACTTCTGGTGCTAAGGAATGTCAGGCATCACCCCAAATCCTTGATGTTAACAAATTGATGGAGCAAAAACCGGTTAATGGATATGCAGAAGGTGCTGGTGGCAGAACTGATTTTTTGGATGACGAAACAGAGGCTCCTGATGACAAATGTGAATCTGAGTTGGGAATGGCTCCTGATGAAGAATTGGTTCATCTTTCAAAAAAAGTAGACACCTCAACAGAAGAGAAGTTAGAAGCAGTTAACCATGATAAAAAATGTGAAGAACCAATGCCTCCTAAAAAAGTCACAAATCAAACTAAAAAACAGAACCTACCTTCAGAGTTAGACTCAACCTCAAAGTTAAAAGTAAAGCATCAAGCGATAAAACGTCCTGCAAGTAAAACCAAGAAGACCACAGTTGCAAAGAGATTAGCAAAATCGGAAAAGGCCGTATTTGGGGAGAAGATTCCGAATGAGACAAGGGATGAGGCAGAGATAAAAATCCTGAAAGAAATGTCATTGTCTGTGCCTTCTGATATAAGTGAGAACTCAAATGCACCAAAAAATAAGCCAGAGAATTTTATTGAAGAGGAAAAGGAGAATAGACCAAATGATGGAGAGCACGGTTTAGAGGAGAGAAGAAATGTTCGAACAACTAAATCTAGTGTTAAGCCAGCAAATATCAAGTCTAAGGAAATGAAACTCGCTCCATCTACATCAGAGTTTAAGGCAAGAGTAAAACCTGAAACCACATGTTTTATTTTAAGTGGGCATCGCCTACAGAGAAAGGAGTTTCAACAGGTAATCAAGCGTTTGAAAGGAAGGGTTTGCCGTGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCAGATCCTTTAAGGAGGACAGAGAAATTTTTTGCCGCTACTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAAGTGCCAGTAGCCAGGCAGGGAAATTATTGCCAGAGGAGCCTTATGAGTGGCACAAAAATGGTCTCAGTGAGGATGGTGCCATCAATATGGAGGCTCCAAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCACGGTGCCTTCTATGGGATGCGCATTGTTGTATATGGTGACTGTTTTGCTCCACCTTTGGATACTCTTAAACGTGCGGTCAAAGCTGGAGATGGAACAATATTAGCAACATCTCCTCCTTATACTCGCTTCCTTGATACTGGGGTCGACTATGCCATAGTTAGCCCTGGCATGCCACGCGTTGATCTGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGCGTTGTAGCGGACTACTTGGTCGAGTATGTCTGCAAGCCCGGGTTCTCCCTCGAGAGACATGTACTGTACGGCACTAATGCTTTGGCAGACAGGTCATTTGCAAAACTTCAAAGTAAGGCAGAAGAAATTATTGAGGAAGTTATTCCTCATGAGTGTGATAATGACGATGATGATGTAGCTTGCCAAGTATGTGGATCCCAGGAAAGAGGAGATGTCATGCTGATTTGTGGTGATGAAAGTGGTTCTGTTGGCTGTGGAGTGGGTACTCATATCGACTGCTGCGATCCTCCGCTGGCAGCTGTTCCTGAGGAGGATTGGTTTTGCCCTAAATGCAGTAGCACCCAAACATGCTCAAAAAAAGCCAATAAAAGGAAAAAGGGTGCATTGTCTTCATCCAAGGCAAAGTGA 3732 0.4226 MLGTSHSSQVFRGVHFALFGFDHLTENKIRFKLVNGGGVDAGKNTGNCTHVIVDKIAYDDPVCVAAREDGKTLVTALWVEHSADIGMPVDATSVMYRPLKKLDGIPGAKDLVVCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLATIKLVNHRWLEDCLKDWALLPEDKYNKSGFELEMMAEEAKDSEDEAEDSKLGQSGGRTISKSPPGSKFGTAVTHGLSKPLREEASNAIPNSTGPQVFPNANNGKDSSITTGNKNNSGQDVDLHNIGDLKVSCQVPDVTLHSTSRQLPESYVRTIESKNADFPKPPGFQGQDQDITGNINSSGLRPNLHDDNLETEKLSYTRSTSTSADGLAHSDEKLGATSYSRKNQKGFTFSRAVDQCEGREGNSLETPSTKVEKTSEGIKSACVEGSGNETGVIQEVYRNNSLPQKRTNEAASSTKLKSRKITSNAKLSIEKTPLTNGKSQGLKVPSVVDEPPVSDGFLSVDKDGINNLNTCLISKSAASASNSVAFDKPISGNAESAQRDNAYQNSVQKTVQSLNKSKIGGEPDVTGFGKGHGDNEAEQLNVTTHLECSSPGKNSKNEGCPGIDNWDLSNEESNKLIRKSPRKKSAAKRTLGSRPRKGVTAKLKSSVCLNKTTQRDEGVSSSGRSKEAATSGAKECQASPQILDVNKLMEQKPVNGYAEGAGGRTDFLDDETEAPDDKCESELGMAPDEELVHLSKKVDTSTEEKLEAVNHDKKCEEPMPPKKVTNQTKKQNLPSELDSTSKLKVKHQAIKRPASKTKKTTVAKRLAKSEKAVFGEKIPNETRDEAEIKILKEMSLSVPSDISENSNAPKNKPENFIEEEKENRPNDGEHGLEERRNVRTTKSSVKPANIKSKEMKLAPSTSEFKARVKPETTCFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHFIAPDPLRRTEKFFAATASGRWILKTDFLSASSQAGKLLPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCFAPPLDTLKRAVKAGDGTILATSPPYTRFLDTGVDYAIVSPGMPRVDLWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTNALADRSFAKLQSKAEEIIEEVIPHECDNDDDDVACQVCGSQERGDVMLICGDESGSVGCGVGTHIDCCDPPLAAVPEEDWFCPKCSSTQTCSKKANKRKKGALSSSKAK 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03631 1243 SMART PHD_3 1168 1220 IPR001965 -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 202 238 - -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 654 686 - -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 1221 1243 - -
Mepo4g03631 1243 Gene3D BRCT domain 1033 1131 IPR036420 -
Mepo4g03631 1243 ProSiteProfiles Zinc finger PHD-type profile. 1166 1222 IPR019787 -
Mepo4g03631 1243 Gene3D BRCT domain 2 95 IPR036420 -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 1227 1243 - -
Mepo4g03631 1243 Pfam PHD-finger 1169 1221 IPR019787 -
Mepo4g03631 1243 SMART BRCT_7 915 996 IPR001357 -
Mepo4g03631 1243 SMART BRCT_7 8 86 IPR001357 -
Mepo4g03631 1243 SMART BRCT_7 106 183 IPR001357 -
Mepo4g03631 1243 SMART BRCT_7 1034 1121 IPR001357 -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 795 811 - -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 566 585 - -
Mepo4g03631 1243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1132 1236 IPR013083 -
Mepo4g03631 1243 CDD BRCT_TopBP1_rpt7 923 996 - -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 595 733 - -
Mepo4g03631 1243 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 322 358 - -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 219 233 - -
Mepo4g03631 1243 SUPERFAMILY BRCT domain 923 1010 IPR036420 -
Mepo4g03631 1243 ProSiteProfiles BRCT domain profile. 924 1006 IPR001357 -
Mepo4g03631 1243 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 336 353 - -
Mepo4g03631 1243 Pfam twin BRCT domain 111 175 IPR001357 -
Mepo4g03631 1243 Gene3D BRCT domain 99 220 IPR036420 -
Mepo4g03631 1243 Pfam BRCA1 C Terminus (BRCT) domain 927 991 IPR001357 -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 400 426 - -
Mepo4g03631 1243 SUPERFAMILY FYVE/PHD zinc finger 1146 1220 IPR011011 -
Mepo4g03631 1243 SUPERFAMILY BRCT domain 8 92 IPR036420 -
Mepo4g03631 1243 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 792 1235 IPR044254 -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 763 812 - -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 773 788 - -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 848 896 - -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 862 890 - -
Mepo4g03631 1243 Gene3D BRCT domain 917 1032 IPR036420 -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 410 424 - -
Mepo4g03631 1243 MobiDBLite consensus disorder prediction 251 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03631 Mepo-Chr4 45657954 45665676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03631 129 245 Core DNA Replication Machinery Family AT4G02110 63.248 8.45e-39 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo4g03631 BRCT 1.6e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03631 K10728 - cave:132171163 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03631 4 45657954 45665676 Mepo4g03631 4 45657954 45665676 ECH