Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03630 ATGGTTGGGCAACCCTTCATGGATTTTAGGTCATTTGCCAAATATCAAAGTAAGGCAGAAGAGATTATCGAGGAGGTCATTCCTCATGAGGGTTGCGATGAGGATAATGTAGCTTGCCAAGTATGTGGATTGCGGGAAAGAGGAGATGTGATGCTGATTTGTGGTGATGAAACTGGTTCCGTTGGCTGTGGAGTGGGTACCCATTTCGATTGCTGTGATCCTCCACTGACGGCTATTCCCGAAGAGGATTGGTTTTGCCCAAAATGTATTAGAACCCAAAAATGCTCAAAAAAAGTCAATAAAAGGAAAAAGGGTGCACTGTCTTCATCAAAGGCCAAGTGA 342 0.4415 MVGQPFMDFRSFAKYQSKAEEIIEEVIPHEGCDEDNVACQVCGLRERGDVMLICGDETGSVGCGVGTHFDCCDPPLTAIPEEDWFCPKCIRTQKCSKKVNKRKKGALSSSKAK 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03630 113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 106 IPR013083 -
Mepo4g03630 113 ProSiteProfiles Zinc finger PHD-type profile. 36 92 IPR019787 -
Mepo4g03630 113 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 10 105 IPR044254 -
Mepo4g03630 113 Pfam PHD-finger 39 90 IPR019787 -
Mepo4g03630 113 SMART PHD_3 38 90 IPR001965 -
Mepo4g03630 113 SUPERFAMILY FYVE/PHD zinc finger 25 97 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03630 Mepo-Chr4 45657484 45657825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03630 4 105 C2H2 Transcription Factor Family AT3G01460 27.679 3.08e-09 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo4g03630 PHD 7.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g03630 K10728 - gmx:100799144 162.155