Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g03623 ATGGGAGAAGTTGTTTTGCTGGTTGATGATTTGAAATCATTTTCTGGATTTTCTCGTTGTAGAATATGTCATGAAGAAGAATTTGAAAGCTTCAAAAGCTTAGAAGCTCCTTGTGCATGTTCTGGTACAGTTAAGTTTGCTCATAGAGATTGCATTCAAACATGGTGCAATGAAAAAGGAAACACAACTTGTGAAATTTGTCTACAGCAATATGAACCTGGATACACAGCACCACCACCAAAGAAATGTCTAAAACCTGAAGAAGCAATGACCATTGGCATTAGAGATAGCCTTGAAATATCAAGGAGGGAGGAAGAAGAGTTAAACAGAAGAATAGTTGGTATAGTTGAAGGTGTAACAAGACAAAACAATTACTCTCAATGCACCTATGCTGCAGATAGAAGTGCCTCTTGCTGCAGATCACTGGCTTTAGCATTTACTCTCATATTGCTTCTAAGACATCTTTTTGCTTTGCTTACAAATGGAATGGAAGATTATCCATTTACAATTCTTACAATCTTTATACTAAGGGCCAGTGGAATTATTATACCTATGTGCATAATTATTAGGACTATGGGAGCCATTCATAAAAGTATCCAACGTCATTATCATCAGGATTCTGAAGATGACTCATTATTGTCTGATGGAGATGATGAAGAAAATGGGACACCACATATTGCAATTTTAAGACATTCACATTATTAG 705 0.3603 MGEVVLLVDDLKSFSGFSRCRICHEEEFESFKSLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAPPPKKCLKPEEAMTIGIRDSLEISRREEEELNRRIVGIVEGVTRQNNYSQCTYAADRSASCCRSLALAFTLILLLRHLFALLTNGMEDYPFTILTIFILRASGIIIPMCIIIRTMGAIHKSIQRHYHQDSEDDSLLSDGDDEENGTPHIAILRHSHY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g03623 234 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Mepo4g03623 234 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Mepo4g03623 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 77 IPR013083 -
Mepo4g03623 234 CDD RING_CH-C4HC3_MARCH 20 67 - -
Mepo4g03623 234 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Mepo4g03623 234 SUPERFAMILY RING/U-box 18 72 - -
Mepo4g03623 234 Pfam Protein of unknown function (DUF3675) 73 192 IPR022143 -
Mepo4g03623 234 SMART ringv_2 19 68 IPR011016 GO:0008270
Mepo4g03623 234 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 18 202 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g03623 Mepo-Chr4 45581272 45583663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g03623 20 67 C3H Transcription Factor Family AT2G37950 44.898 5.78e-07 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g03623 4 45581272 45583663 Mepo4g03623 4 45581272 45583663 ECH
Mepo3g03774 3 47238490 47241290 Mepo4g03623 4 45581272 45583663 PCT